Pseudomonas sp. RIT357, BW43_RS27055

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. RIT357 contigs1, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GATCCAGCAGATCGCCCCGCCGCGCACGCTGTACGAAGAACCGAAGAACACCTTCGTCGCTAACTTTATTGGCGAGAACAACCGCCTCAACGGCCGCTTG CACAGCCACACCGGAGACCGCTGCGTGGTCGAGCTGGCGCGGGGCGAGAAGGTTGAAGCACTGGCGATCAATGTCGGCCAGATCGGTGGCCCTGTAACGC TATCGGTGCGTCCGGAACGGGTCAGCCTCAATGGCTCCAGCGAAAGCTGCATCAACCGCTTCTCCGGGCGGGTGGCCGAATTTATCTACCTGGGCGACCA CGTGCGTGTGCGCCTGGAAGTCTGCGGCAAGACCGATTTTTTTGTGAAACAACCGATTGCCGAGCTGGACCCAGCACTGGCGGTCGGCGACGTGGTACCG ATTGGCTGGCAAGTCGAGCACGTTCGCGCACTCGACCCACTTCTAGAGGCGAATTGATCGCCCCATGGCTTCACCAACCCTGCACGTGGAGAGAACAACA
DNA Sequence for Gene
>BW43_RS27055
ATGTTGAGATCCCTGAAGTATTCCGTCCTGGCCTTGAGCTTGATGGGCGCGACACAGGCCATGGCCGGCCCGGACCTGACCGTCGTGTCCTTTGGTGGCG CGAACAAGGCTGCACAGGTCAAGGCCTTCTATGCACCGTGGGAAAGCGCGGGCAACGGCAAGATCGTCGCCGGTGAGTACAACGGTGAGATGGCCAAGGT CAAAGCCATGGTCGACACCAAAAGCGTGTCCTGGGACCTGGTAGAAGTGGAATCGCCGGAACTGTCCCGCGGTTGTGACGAAGACATGTTCGAACCGCTG GACCCGAAACTGTTCGGCGACAGCGCCAACTACGTGAAGGGTGCGATCCAGCCATGCGGCGTGGGTTTCTTCGTATGGTCGACTGTGTTGGCGTACAACG CCGACAAACTGGCTTCCGCGCCAACCAGTTGGGCGGATTTCTGGGACACCAAGAAATTCCCGGGCAAGCGCGGCCTGCGCAAAGGTGCCAAGTACACCCT GGAATTCGCCTTGATGGCCGACGGCGTAGCGCCGAAGGACGTGTACAAAGTGCTGGCCGGCAAAGATGGCCAAGACCGAGCGTTCAAGAAACTCGATGAA CTCAAGCCGTCGATCCAATGGTGGGAAGCTGGCGCACAACCGCCGCAGTACCTCGCATCGGGTGACGTGGTGATGAGCTCGGCTTACAACGGCCGAATCG CTGCCGTGCAGAAAGAAAGCAACCTGAAAGTGGTGTGGAACGGCGGCATCTACGACTTCGATGCATGGGCGATTCCAAAAGGCCTGGCCAAGGATCGCGC AGAAGCAGCGAAGAAATTCATCGCCTTCTCGGTCGCACCGCAGCAGCAGAAGACCTACTCGGAAAACATCGCCTACGGCCCGGCCAACACCCAAGCCGTA CCGTTGCTGGCCAAGGACATCCTCAAGGACATGCCGACTACGCCAGAGAACATCGCCAACCAGGTGCAGATCGACGTGAGCTTCTGGGCGGACAACGGCG AGCAGCTTGAGCAGCGCTTCAATTCTTGGGCTGCCAAGTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
CCCGCCTGCTGTGTTCAAGGGGCTTTTGTGGTGAGCGGGCTTGCCCCGCGCTGGGCTGCGAAGCAGTCCCAAACCAGGCGCCGTGTTCTGTCTGAAAGAA CGCGGTGACTGTCAGAGGGGCCGCTTCGCCGCCCAGCGCGGGGCATGCCCGCTCACCACAGCGTCTGAGCCCAGGCACAGGTTTGTCGTCACTTTCAGAT TTTCGGAGTTAGCCATGGCCATCGCCGTTCCCTCGAACGAGGTCAACAGCCCCACCCTCAAGCAGCGCCTGGCGCGTGCCGAGCGGGTCAATCGCTGGAA GGCCCAGGCCTTGATTGCACCGCTGGTGCTGTTTTTGCTGCTGGTGTTTCTGGTGCCGATCGTCGCGCTTTTGTTCAAGAGCGTCGGTAATCCGGAAGTG GTGGGCGGCCTGCCGCGTACCGTGGTGGCGGTGACTGCCTGGGACGGCCGTGGTCTGCCGGGTGAACCGGTGTATCAGGCTCTCAGTGAAGACCTGGGTG
Amino Acid Sequence
>spermidine/putrescine ABC transporter substrate-binding protein
MLRSLKYSVLALSLMGATQAMAGPDLTVVSFGGANKAAQVKAFYAPWESAGNGKIVAGEYNGEMAKVKAMVDTKSVSWDLVEVESPELSRGCDEDMFEPL DPKLFGDSANYVKGAIQPCGVGFFVWSTVLAYNADKLASAPTSWADFWDTKKFPGKRGLRKGAKYTLEFALMADGVAPKDVYKVLAGKDGQDRAFKKLDE LKPSIQWWEAGAQPPQYLASGDVVMSSAYNGRIAAVQKESNLKVVWNGGIYDFDAWAIPKGLAKDRAEAAKKFIAFSVAPQQQKTYSENIAYGPANTQAV PLLAKDILKDMPTTPENIANQVQIDVSFWADNGEQLEQRFNSWAAK
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site