Pseudomonas putida S16, PPS_4036
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Molecular Function | GO:0016491 | oxidoreductase activity |
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:1.10.620.20
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Biological Process | GO:0009263 | deoxyribonucleotide biosynthetic process |
Inferred from Sequence Model
Term mapped from: InterPro:PF00268
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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|
Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| MetaCyc | adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| KEGG | ppt00230 | Purine metabolism | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| MetaCyc | guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| KEGG | ppt01100 | Metabolic pathways | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| MetaCyc | adenosine deoxyribonucleotides <i>de novo</i> biosynthesis | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| MetaCyc | pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| MetaCyc | pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| MetaCyc | pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| MetaCyc | pyrimidine deoxyribonucleotides biosynthesis from CTP | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| KEGG | ppt00240 | Pyrimidine metabolism | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| MetaCyc | guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| PIRSF | PIRSF000355 | NrdB | IPR000358 | Ribonucleotide reductase small subunit family | 74 | 425 | 0.0 |
| PANTHER | PTHR23409 | RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SMALL CHAIN | IPR000358 | Ribonucleotide reductase small subunit family | 106 | 420 | 1.6E-68 |
| Pfam | PF00268 | Ribonucleotide reductase, small chain | IPR000358 | Ribonucleotide reductase small subunit family | 105 | 392 | 3.9E-87 |
| CDD | cd01049 | RNRR2 | IPR033909 | Ribonucleotide reductase small subunit | 105 | 401 | 7.96734E-113 |
| Gene3D | G3DSA:1.10.620.20 | Ribonucleotide Reductase, subunit A | IPR012348 | Ribonucleotide reductase-like | 79 | 406 | 3.7E-98 |
| FunFam | G3DSA:1.10.620.20:FF:000003 | Ribonucleoside-diphosphate reductase subunit beta | - | - | 78 | 406 | 0.0 |
| SUPERFAMILY | SSF47240 | Ferritin-like | IPR009078 | Ferritin-like superfamily | 68 | 398 | 1.14E-97 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.