Pseudomonas syringae pv. syringae B301D-R, PSSB301D_RS02495
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. syringae str. B301D-R B301D_Contig57, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTAGACGGCGCCATTTCGCCGAACTGATCAGCGCGCTGGCCGATGCCCGAAAAACCTCGAACCGCGCTCGGTTCGGGGTTTTTCAGCTTTTGACCTGTGC GTCAGTCGCGATAGAACACCTGTACCAGGTGATAGCCAAATTTGCTCTTGATTGGCCCATGCACGACGCGCAGCGGCTTTTTGAAGATCACCTGATCGAT GGCGCCGACCATTTGCCCAGGCCTGACTTCGCCCAGATCGCCGCCACGTTTGCCGGACGGGCAGCTAGAATGCTTTTTAGCCAGCACGTCAAACGCCTCA CCCTTGGCAATACGCAGCTTGAGCTGTTCGGCCTCTTCGGCGGTCTTCACCAGAATATGGCGGGCTTGGGCTTTCATGTCGCAATATCACCTGCTGCAAA AGGCTGCCATTATGCCTGCTCTTGCTGAGCGACGCCCGCGCGTCACACGTGCCGTCCTGACGGTCGTGGTCTCTTTACTTCATTTTGTACGGTATTGATT
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| DNA Sequence for Gene |
>PSSB301D_RS02495
ATGGATTTCCCGGCGCTGTTGAAGATTCTGGCCAGTCAGGACGGATCGGACCTGTACCTCTCCACCGGAGCGCCACCGTGCGCCAAGTTCAACGGTGTGC TCAAGCCACTGGGCAGCGAAACCTTCAAGCCGGGGGAGGTCGCAGTCATTGCCCAGGGGCTGATGGACGAAGAACAGAAGCTCGAGTTTCAACGCGAACT GGAGATGAACCTCGCCGTTTCGATGGCGGGCATCGGCCGGTTCCGGATCAATATCTTTATGCAGCGCAACGAAGTGTCCATCGTCGCGCGGAATATCAAG CTGGACATCCCGCGTTTCGAAGACCTGTTCCTGCCGCCCGTGCTGCTCGACGTGATCATGGAAAAGCGCGGTCTGGTGCTGTTTGTCGGGGCCACCGGTT CGGGCAAGTCGACCTCATTGGCGGCGCTGATCGACTACCGTAACCGCAACGCCAGCGGCCATATCATCACCATTGAGGACCCGGTCGAGTTCATCCATCG CCACAAGAAATCGATCGTCAACCAGCGCGAAGTCGGGGTCGATACCCGCAGCTTCCATGCGGCATTGAAAAACACGCTGCGCCAGGCGCCGGATGTGATT CTGATCGGCGAGATTCGTGATCGCGAGACCATGGAGCACGCGCTGGCGTTTGCCGACACCGGCCACCTGGCGATCTCGACCCTGCACGCCAACAACGCCA ATCAGGCGCTGGACCGGATCATCAATTTCTTCCCGGAAGAGCGTCGCGCGCAGTTACTGCATGACCTGGGCAACAACCTCAAGGCATTCGTCTCCCAGCG GCTGGTCAGAACCCCGGATGGCAAGCGCCGCGCGGCGGTGGAAGTGATGATGGGCACGCCGACCATTCGCGACCTGATCCAGCGCAATGAACTGACCGAA CTCAAGGGCATCATGGAGAAGTCCGGCAGCCTCGGTATGCAGACGTTCGACTCGGCGCTGTTCAATCTGGCCGTCGAAGGGGCGATCAGCGAAGAAGAAG CCCTCAAGAACGCCGACTCGCAGAACAACGTGCGCCTGCGCCTCAAACTGCACAGTGAAGGCGGCGCCGGGAGCCTCACCACACCGCCGCCGGCCCCGAC CGGCAGCAGCACGGCAAGCACCGCCGAGTGGGGGCTGGTCGATGATGACGCGCCGGGTCCGCAGGCGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ATCAGAGACGCTCCTACGCCCCCCGGGCAGAAGCTTCGTTGTGGGCCAGATCATTCCGGATGCGCGGCCGCCAGCAATTCCTGCGTGTAGGGATGTTGCG GTGCCTCGAAGACATCATGGCTCGCGCCACGCTCGACGACTTTGCCATCCTTGACCACGATCACGTCGTGGGCGAGGGCTTTGACCACTGCCAGGTCATG GCTGATGAACAGATACGTCAGGCCATGCTTTTCCTGAAGTTCGCGCAGCAGCGCCACGACCTGTTTCTGTACGGTACGGTCCAGCGCCGATGTCGGCTCA TCGAGCAGAATCAGTGCGGGTTTCAGCACCAGCGCCCGGGCAATGGCGATGCGCTGACGCTGGCCACCGGAAAATTCATGGGGGTAGCGATGCCGACTCT GCGGGTCGATGCCGACTTCTTCCAGCGCCCGAATGACCTCTGCATCGCATTTCGCCGGGTTGTACTGGCTGTGCACCTCCAGCCCCTCACTGATGATCTG
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| Amino Acid Sequence |
>twitching motility protein PilT
MDFPALLKILASQDGSDLYLSTGAPPCAKFNGVLKPLGSETFKPGEVAVIAQGLMDEEQKLEFQRELEMNLAVSMAGIGRFRINIFMQRNEVSIVARNIK LDIPRFEDLFLPPVLLDVIMEKRGLVLFVGATGSGKSTSLAALIDYRNRNASGHIITIEDPVEFIHRHKKSIVNQREVGVDTRSFHAALKNTLRQAPDVI LIGEIRDRETMEHALAFADTGHLAISTLHANNANQALDRIINFFPEERRAQLLHDLGNNLKAFVSQRLVRTPDGKRRAAVEVMMGTPTIRDLIQRNELTE LKGIMEKSGSLGMQTFDSALFNLAVEGAISEEEALKNADSQNNVRLRLKLHSEGGAGSLTTPPPAPTGSSTASTAEWGLVDDDAPGPQA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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