Pseudomonas syringae pv. syringae B301D-R, PSSB301D_RS03785
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. syringae str. B301D-R B301D_Contig49, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATCCCCCAGCCATTCCTCGCCCGGCTGCTCGACAGGCACCCCGAGTACTGGCGCTGGTTTGCCGCACTGCTCAGCCAGAAGGTCGGCTTGCCACTGCAGA GCCCCGAGAAAATGCGTCAGCTGCCGCCGCGGGCGCGGATCGCCTGGCGGCTGTTGATGCTCAGCGAGGGGTATGGCCCGTTGAGCCACGCACGCCGCCT GATTGCGCTGGATGACATTCAGGCGGCGGAGCGTCTTGCGCTTGCCTCGCCGGCCTTGCTGGAAGTACTCCAGGACCTGCATCAGCGCAGGATCGTGCGC CTGGGAGAGGGGCACCTGGAGGTGTTCGATGTGGACAGGCTGCGCAGGGTCGCGAACTTTTCCAGAGCCAGGGCTGTGTGCTGATCACCGGTCATGATCG GGCCTGGACACATCCGGTAACGGCTCCGCTGTCGCTTCGATTGAGATAGCAAATGGGATTCACTACCATTTCGCCTCCTTTGCGAACGCGAGATACCCCG
|
|
| DNA Sequence for Gene |
>PSSB301D_RS03785
ATGCAGGCAAGCAAGCGTCTTCTGGCTGCTCTGACACTGACTTTACTGGGCAGCACCGCTCAGGCTGCCGATGAAGTGGTGGTGTATTCGTCCCGGATCG ACGAACTGATCAAGCCGGTATTCGATGCGTACACGGCCAGTACCGGGGTGAAGATCAAATTCATCACCGACAAGGAAGCGCCGCTGATGCAGCGCATCAA GGCCGAGGGCGAGAATGCCACCGCCGACCTGTTGCTGACGGTCGACGCGGGCAACCTCTGGCAGGCCGAGCAGATGGGTATCCTGCAGCCGTTTACCTCC CCGGTGATCGAAGCCAACATTCCACCGCAGTATCGCTCGTCGACCCACGGCTGGACCGGTCTGAGCCTTCGCGCGCGGACCATCGCCTACTCCACCGACC GGGTGAAGCCTGCCGAGCTGAGCACCTACGAGGCGCTGGCCGACAAGAACTGGGAAGGCCGTCTGTGCCTGCGTACCGCGAAGAAGGTCTACAACCAGTC GCTGACCGCTACGCTGATCGAAACCCACGGCGCCGAAGCGTCGGAGAAAATCCTCAAGGGCTGGGTCAACAACCTGTCCACCGACGTGTTCTCCGATGAC ATCGCGGTGCTTGAGGCGATCAATGCCGGGCAGTGCGACGTGGGTATCGTCAATTCCTATTACTACGGTCGCCTGCACAAGGAAAAACCGGACCTGGCGG TGAAGCTGTTCTGGCCGAACCAGGCTGATCGCGGTGTGCACGTCAACCTGTCGGGTATCGGTCTGACCAAGTACGCCCCGCATCCTGAAGCCGCCAAGGC GCTGGTCGAGTGGATGACCGGCCCCGAGGCGCAGAAGATTTTCTCCAGCGTCAATCAGGAGTTCCCGGCCAACCCGAACGTGGCGCCTTCAGAAGAAGTG GCCAGCTGGGGGCCGTTCAAGGCCGACACCCTCCCGGTTGAAGTGGCAGGCAAGCGTCAGGCAGAAGCGATACGCATGATGGATCGCGCGGGCTGGAATT GA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TTTAATACCCAGTGCCTTATCGCTCCCACGCTTCAGTGCTCAGCGTTAGCTCAGGTACTGAATAGCCTGGAACACGGGGCTTTCAGGCTTCTGCCCGCAG GGCGTAGGAGCGGACTTGTCCGCGAAGCCGTCAGTTCAGATAGTGCATTTTCTGAGAATGTACCGGCCTTTTCGCGGACAAGTCCGCTCCTACGGCTTTC AGCCAGAATCAGAAGCAGACCTGTGCGCACGCTCTGCTTACCCTCTTGAACCCCCTCATGTCGAGAACCTCCGTGGCCCATCCTGCCCAACGCCGCTGGT ACCCCCTGGTTTTCGCCATCGCTGCACTGGTCGTGCTGCCGCTGAGCGTTCTGCTGCTGTCGTGGGAGACGGTCGACCAGCAGATATGGTCGCACCTGCT CGAAACCCAGATGGCGCGTCTGCTGAGCAATACGCTGATCCTGGTGCTGGGTGTCGGCGTGGGCGTGACCCTGCTGGGGGTGAGCCTGGCGTGGCTGACC
|
|
| Amino Acid Sequence |
>iron ABC transporter substrate-binding protein
MQASKRLLAALTLTLLGSTAQAADEVVVYSSRIDELIKPVFDAYTASTGVKIKFITDKEAPLMQRIKAEGENATADLLLTVDAGNLWQAEQMGILQPFTS PVIEANIPPQYRSSTHGWTGLSLRARTIAYSTDRVKPAELSTYEALADKNWEGRLCLRTAKKVYNQSLTATLIETHGAEASEKILKGWVNNLSTDVFSDD IAVLEAINAGQCDVGIVNSYYYGRLHKEKPDLAVKLFWPNQADRGVHVNLSGIGLTKYAPHPEAAKALVEWMTGPEAQKIFSSVNQEFPANPNVAPSEEV ASWGPFKADTLPVEVAGKRQAEAIRMMDRAGWN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|