Pseudomonas syringae pv. syringae B301D-R, PSSB301D_RS08495 (hscA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. syringae str. B301D-R B301D_Contig33, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTGGCCACGCGCTACCGTGAGCTTGCGCGCAACGTGCATCCGGATCGTTTTGCGGATGCCCCCGAGCGTGAGCAGCGTGTGGCGCTGGAGCGCTCGGCCA GTCTCAACGAGGCCTATCAGACCCTGAAAAGCCCGCCGAAAAGGGCGCGTTATCTGCTGGCAATGAACGGCAACGAAGTGCCGCTCGAAGTCACGGTGCA TGATCCCGAGTTTCTTCTGCAGCAGATGCAATTGCGCGAAGACCTCGAGGACTTGCAGGACGAGGCTGATCTGGCCGGCGTCGCGACCTTCAAGCGTCAG CTCAAGATCGCTCAGGACGAACTGAACCAGAGCTTCGCAGCCTGTTGGAATGATGCTGCACAACGCGAGCACGCTGAAAAGCTGATGCGGCGTATGCAGT TTCTCGACAAGCTCTCTCACGAAGTGCGCCAGTTAGAAGAGCGCCTCGACGATTAACCCCGCGCGGCTTCGGCCGCGCGCCAGTGATTATTCTGAACAGC
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| DNA Sequence for Gene |
>PSSB301D_RS08495
|hscA
ATGGCTTTACTGCAGATCGCCGAACCCGGCCTGAGTCCTCAACCGCACCAGCGTCGTCTGGCTGTGGGTATCGACCTGGGCACTACCAATTCTCTGGTTG CTGCAGTACGCAGCGGCCTGTCCGAACCGCTGGCCGATGCAGAGGGGCAGGTCATTCTGCCGTCTGCCGTGCGCTATCACGCTGATCGTGTCGAAGTAGG GCAGTCAGCGAAGATCGCCGCCTCCCAGGACCCGTTCAATACCGTTCTGTCGGTCAAGCGTCTCATGGGTCGTGGTCTGACCGACGTCAAGCAACTGGGC GAGCAACTGCCGTACCGGTTTGTTGGCGGTGAGTCGCACATGCCGTTCATCGACACCGTGCAGGGGCCGAAAAGCCCGGTCGAAGTGTCTGCCGACATCC TCAAGGTCCTGCGCCAGCGCGCAGAAGCCTCACTGGGTGGCGAGCTGGTAGGCGCGGTGATCACCGTTCCTGCCTACTTCGATGACGCTCAGCGTCAGGC GACCAAGGACGCTGCCAGACTGGCGGGACTCAATGTACTGCGCCTGCTCAATGAGCCTACGGCTGCGGCGGTGGCCTACGGCCTGGATCAAAAGGCCGAA GGTGTGGTTGCCATCTATGACCTGGGCGGCGGAACCTTCGATATTTCGATCCTGCGCCTGACCGGTGGTGTGTTTGAAGTACTGGCCACTGGCGGCGATA CCGCTCTGGGTGGCGATGACTTCGATCATGCGATAGCCAGCTGGATTGTCACGGATGCCGGTCTGTCAGCCGATATTGACCCTTCCGCGCAGCGCAGCCT GCTGCAGGCTGCCTGCTCGGCCAAGGAAGCGCTGACTGACGCCGAGTCTGTCGAGGTCGTCTACGGTGAGTGGCGTGGCACGCTGACGCGCGAGGCGCTC AATGCGCTGATCGAACCTATGATTGCCCGCAGCCTCAAGGCCTGTCGTCGTGCGGTGCGTGATACTGGTATCGAGCTTGAAGAAGTCGAGGCGGTGGTCA TGGTCGGCGGTTCGACCCGTGTTCCGCGAGTGCGCGAAGCGGTGGCCGAGCTGTTCGGTCGTCAGCCGCTGACCGAGATCGACCCGGATCAGGTGGTGGC CATCGGGGCTGCGATCCAGGCCGATACCCTGGCCGGCAACAAGCGTGACGGTGGCGAACTGCTGCTCCTCGATGTGATTCCGCTCTCGCTGGGGCTGGAA ACCATGGGCGGGCTGATGGAGAAAGTCATTCCGCGCAACACCACCATCCCTGTGGCACGTGGTCAGGAATTCACCACATACAAGGATGGCCAGACGGCCA TGAAGATTCATGTCCTGCAGGGCGAGCGTGAATTGATCAGCGACTGTCGTTCGCTGGCGCGCTTCGAACTGCGTGGCATCCCGCCGATGGTCGCGGGTGC GGCAAAGATTCGTGTCACCTTCCAGGTCGATGCTGACGGTCTGCTCAGCGTCTCGGCGCGTGAAATGGGCTCGGGCATCGAGTCGAGCATTCAGGTCAAG CCGTCCTACGGGCTGACCGATGACGAGGTCACCCGCATGCTCAAGGACTCCTTCGAGTATGCCGGCGACGACAAGGTCGCTCGTGTGCTGCGTGAGCATC AGGTTGATGCCGAGCGCCTGCTCGAAGCTGTTCAGGGTGCCCTGGATGCCGATGGCGAGCGTCTTCTCGACGAAGAAGAGCGCCTGGTCATCAACCTGCA GATGGACGAACTCCGTGAACTGATGCAAGGCACCGATGGTTATGCCATCGAGCAGCAGACCAAGCGTCTGTCGCAGGTGACCGATGCATTTGCTGCCCGA CGCCTCGATTCGACGGTAAAAGCCGCACTGGCCGGGCGCAACTTGAATGAGATTGAGGAATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CTGATGCCGCAGGTGATTTTTCTGCCCCACGCCGAGCATTGCCCGGACGGGCTGGTTGTAGAAGTGGAGCCCGGCACGTCTATTCTCGACATTGCCCACG AGCACCACATCGAGATTGAAAGCGCCTGTGGTGGCGTGTGTGCGTGCACGACCTGTCATTGCGTCATTCGCGAAGGGTTCGATTCGCTGAATGAGGCCGA TGAGCTGGAAGAAGACATGCTCGACAAGGCGTGGGGGCTGGAACGGCAGTCACGTCTGTCCTGTCAGGCCATTGTCGGCAACGAAGACCTGACGGTCGAA ATACCCAAGTATTCGCTCAACCACGCCGCTGAAGCGCCGCACTGATTCAAGGATTGCTCATGAGTCTCAAATGGGTTGATGTTCAGGAAATCGCCATCCA GCTGGCTGAAAGCCACCCGGAGGTAAATCCGCTCACCGTGAGCTTCCCCAGGCTGCGTGGTCTGGTCATGGCCTTGCCTGAATTCGATGACCATCCGGAC
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| Amino Acid Sequence |
>chaperone protein HscA
MALLQIAEPGLSPQPHQRRLAVGIDLGTTNSLVAAVRSGLSEPLADAEGQVILPSAVRYHADRVEVGQSAKIAASQDPFNTVLSVKRLMGRGLTDVKQLG EQLPYRFVGGESHMPFIDTVQGPKSPVEVSADILKVLRQRAEASLGGELVGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAVAYGLDQKAE GVVAIYDLGGGTFDISILRLTGGVFEVLATGGDTALGGDDFDHAIASWIVTDAGLSADIDPSAQRSLLQAACSAKEALTDAESVEVVYGEWRGTLTREAL NALIEPMIARSLKACRRAVRDTGIELEEVEAVVMVGGSTRVPRVREAVAELFGRQPLTEIDPDQVVAIGAAIQADTLAGNKRDGGELLLLDVIPLSLGLE TMGGLMEKVIPRNTTIPVARGQEFTTYKDGQTAMKIHVLQGERELISDCRSLARFELRGIPPMVAGAAKIRVTFQVDADGLLSVSAREMGSGIESSIQVK PSYGLTDDEVTRMLKDSFEYAGDDKVARVLREHQVDAERLLEAVQGALDADGERLLDEEERLVINLQMDELRELMQGTDGYAIEQQTKRLSQVTDAFAAR RLDSTVKAALAGRNLNEIEE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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