Pseudomonas syringae pv. syringae B301D-R, PSSB301D_RS18775

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0055085 transmembrane transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF07690
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0022857 transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF07690
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR12778
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:1.20.1250.20 MFS general substrate transporter like domains IPR036259 MFS transporter superfamily 11 220 5.6E-8
FunFam G3DSA:1.20.1250.20:FF:000072 Muropeptide transporter AmpG - - 15 219 7.3E-74
Pfam PF07690 Major Facilitator Superfamily IPR011701 Major facilitator superfamily 21 321 1.9E-8
PANTHER PTHR12778 SOLUTE CARRIER FAMILY 33 ACETYL-COA TRANSPORTER -RELATED IPR004752 AmpG-like permease/Acetyl-coenzyme A transporter 1 4 496 9.9E-73
Gene3D G3DSA:1.20.1250.20 MFS general substrate transporter like domains IPR036259 MFS transporter superfamily 306 509 4.2E-13
NCBIfam TIGR00901 JCVI: AmpG family muropeptide MFS transporter - - 29 455 4.7E-127
SUPERFAMILY SSF103473 MFS general substrate transporter IPR036259 MFS transporter superfamily 2 500 3.01E-29

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.