Pseudomonas syringae pv. syringae B301D-R, PSSB301D_RS19540
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. syringae str. B301D-R B301D_Contig07, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GATGTACTGCTTTACCTGCCTGAGGACGTGAGCAATCCGAATCGGTCGAGCCAGGTTGTGGTGCCTGCCCTGCGCATTCTCGGCGTTGGCGCGCTGCTCG GTCCGGACCGCAACGGCAAGCCGGTGCAGGACATCAACGCTGACGAACGCCTCAAACAGGAGCAGCAGCGGATCAACGCGCGAACCGTCACGGTCGCGGT GCCGCAAGCCCTGGTGGCGCGCCTGATGCTGGCGTCGCAAACCGGTGTGCTGCGTCTGGCCGTGCGCAGCGCCGACGAGGGCAACCTGCAGGATTACTGG GCCAACGAAGCCGGCGGCCCTGACGCTGCCGAGCGACTCGATTCAGCCAACCGCCAACTGGTCAGCTTCAGACAACTGAGCCTGGGCCCGGCCAGCGCGC CAACATCAGGCGCAACCCCGCGTACGTCTCGCGCTGTCGAGGTCATACGCGGTAACCAGATCACGCAACAAACTCCCTGATTGAGCAAGGATTGCATTTG
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| DNA Sequence for Gene |
>PSSB301D_RS19540
ATGAGCTGTTGTTCCGTGCCAGTTATAAAACCCCGTTTGCTGGCGTTAGTCATCGCAACATTGTGCGCGCCAGGCGCGTGGGCCGCTTCGGGCAGTTGTG CCGGCCTTGCCGCGATGCCGGCTGCCGTGGAAATTGACCAGGGCATTCAACAGGAGGTGCGCTCTGCGGTGCCCATCACCCGCATCGCCGTGGGTGATCC GAAAATCGCCGATGTACATGTCAACGGCAGCGACGGTTTTCTGTTGACCGGCGTCGCACAGGGGACGACCAGCCTGATGGTCTGGACCGCCTGCGCAAGC GCGCCACGCCAGAGCATGGTCTTCGTGCGTGGCCGGGCGACGACCGCCATGGTCGAGAGTGTCACCGCGCCGTCTGCCGATGCGCAGTTACCCAGCCAGG TGCAGACCGACATCCGTTTTATCGAAGTCAGCCGCACCAAACTCAAGGAGGCCAGCACCTCGATCTTCGGCAAAGGCTCGAGCAACTTTCTGTTCGGCGC GCCCGGCACGGTACCGGGCGTCAACGTCACACCTGGCGCTGTGGGCGGCATAACGCCGAGCATTCCGCTGAACAACAGCAATTTCAATATCGTCTGGGGC GGTGGCAGCAGCAAGGTGCTGGGCATGATCAACGCCATGGAAAACAGCGGCTACGCCTACACCCTGGCACGCCCCAGCCTGGTCGCCCTCAACGGGCAAA GCGCGAGCTTTCTGGCCGGCGGCGAATTCCCGGTGCCGGTGCCCAATGGTGAAGGCAACGGTATCTCCATCGAGTACAAGGAGTTTGGCGTGCGCCTGAC CCTGACCCCGACTGTCGTGGGCCGGGATCGGATTCTGCTGAAGGTCGCGCCGGAAGTCAGCGAGCTGGATTTCTCGGCCGGCATCACCATCGCCGGGACC ACCGTGCCAGCACTCAACATCCGCCGTACCGATACCAGCATTGCGCTTGCCGACGGCGAGAGCTTCGTGGTCAGCGGGCTGATCAGTTCCAGCAACAGCG GTTCGGTGGACAAGTTTCCCGGTCTTGGCGACATCCCGATTCTCGGTGCATTTTTTCGCAGCTCGCAAATCCAGCGCGACGAGCGCGAACTGCTGATGAT CGTCACCCCGCATCTGGTCCAGCCACTGGCCGCCAACGCCCGGCTGCCGTCGCTGCCAGGTGAGGCACTGCGCACCTACGACCCGAGCTTCCCGCGTCTG TATTTTCTGGAAAACGGCGATTTCGACCGCCGCGACGGATTATCCAAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCAGAGCCTGAGCCAGACCTTTCTGGCAATCACCCGTAACAACACCGACCTGGAGTGGCTGCAAAGTGCTCTGGGTTCGCTGGGCCAGGTGGTCAGTGC CGGTACCGGCAGCCTCGACGACCTGCTCGCGCTGGTGGACGTGACGTTCGCCAGCGTGGTGTTCGTCGGGCTCGACCGTGAGCATTTGATGACCCAGAGC GCCCTGATCGAAAGTGCGCTGGAAGCAAAGCCGATGCTGGCCATCGTTGCGCTCGGCGATGGCATGGATAACCAGCTGGTGCTCAATGCCATGCGCGCCG GAGCCAGGGACTTCGTTGCCTATGGCTCTCGCTCCAGTGAGGTCGCCGGTCTGGTCAGACGCCTGAGCAAGCGCCTGCCCGCCGTGACGCCCAACCCGAA CATGAGCGGCCTGTCGGTGCTGTATGGCGTACAAAGTGATGACGACGGGGCCTTGATCGCGACGCACCTGGCGATGGTCGTGCACAAGAGCGGGCAGCGC
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| Amino Acid Sequence |
>secretin
MSCCSVPVIKPRLLALVIATLCAPGAWAASGSCAGLAAMPAAVEIDQGIQQEVRSAVPITRIAVGDPKIADVHVNGSDGFLLTGVAQGTTSLMVWTACAS APRQSMVFVRGRATTAMVESVTAPSADAQLPSQVQTDIRFIEVSRTKLKEASTSIFGKGSSNFLFGAPGTVPGVNVTPGAVGGITPSIPLNNSNFNIVWG GGSSKVLGMINAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTLTPTVVGRDRILLKVAPEVSELDFSAGITIAGT TVPALNIRRTDTSIALADGESFVVSGLISSSNSGSVDKFPGLGDIPILGAFFRSSQIQRDERELLMIVTPHLVQPLAANARLPSLPGEALRTYDPSFPRL YFLENGDFDRRDGLSK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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