Pseudomonas syringae pv. syringae B301D-R, PSSB301D_RS21225
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. syringae str. B301D-R B301D_Contig05, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGGAGGTGATGCTTAAAGTGTTGTATGGGTTGAAAAATTTTGAAGGTAAATCTAAATTTAAAACCTGGCTGTACAGCATCACCTACAATGAATGCATCAC GCAGTACAGGAAGGAACGGCGTAAGCGTCGCTTGATGGACGCGCTGAGTCTGGATCCACTTGAGGAAGCGTCGGAAGAAAAGGCGCCCAAACCTGAAGAA CGGGGCGGACTTGATCGCTGGCTTGTGTATGTGAACCCGATCGATCGGGAGATTCTGGTCCTGCGGTTTGTTGCAGAACTTGAATTCCAGGAAATCGCTG ACATCATGCACATGGGCTTGAGCGCAACGAAAATGCGTTACAAGCGGGCTTTAGATAAATTACGAGAGAAATTTGCGGGAATCGCCGAAACTTAATACGG TGCAAATATCTCTAACAAACTGGCAAGGTCTGGTAGACTTGCCGCTGAGTTGTCCCCCTGTGTGGGACTGCTTAATAATCATCAGATGGGGATTTAACGG
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| DNA Sequence for Gene |
>PSSB301D_RS21225
ATGAAACTGAAAAACACCTTGGGCTTGGCCATTGGTACTATTGTTGCCGCAACTTCGTTCGGCGCGCTGGCTCAAGGCCAAGGCGCGGTCGAAATCGAAG GCTTCGCCAAGAAAGAGTACTACGACAGCGATCGTAACTTCAAAAACGACGGCAACCTGTTCGGCGGCTCCGTTGGCTACTTCCTGACTGACGATGTTGA GCTGCGTCTGGGCTACGACGAAGTCCACAACGTTCGTAGCGACAGCGGCAAGAACATCAAGGGCGCAGACACTGCTCTGGACGCTCTGTACCACTTCAAC AACCCAGGCGACATGCTGCGTCCATACGTATCTGCCGGCTTCTCTGACCAGAGCATCGGTCAAGACGCTCGCCGTGGCCGTGACGGCTCCACCTTCGCCA ACATCGGCGGCGGCGCCAAGCTGTACTTCACTGACAACTTCTATGCCCGTGCAGGCGTTGAAGCTCAGTACAACATCGACCAAGGCAACACCGAGTGGGC GCCTAGCGTCGGTATCGGTGTAAACTTCGGCGGCGGCAGCAAGAAAGTTGAAGCGGCTCCAGCTCCAGTAGCTGAAGTGTGCTCCGACAGCGACAACGAC GGCGTGTGCGACAACGTCGACAAGTGCCCGGACACCCCAGCCAACGTTACCGTTGACGCTGATGGCTGCCCAGCAGTTGCCGAAGTGGTTCGTGTTGAGC TGGACGTGAAGTTCGACTTCGACAAATCCGTAGTCAAGCCTAGCAGCTACGGCGACATCAAGAACCTCGCTGACTTCATGCAGCAGTACCCACAGACCAC CACCACTGTTGAAGGTCACACTGACTCCGTCGGTCCTGACGCTTACAACCAGAAACTGTCCGAGCGTCGTGCAAACGCCGTTAAACAGGTTCTGGTTAAC CAGTACGGTGTTGGCGCTAGCCGCGTAAACTCGGTTGGTTACGGCGAAACCAAGCCAGTTGCTGACAACGCAACTGAAGCAGGTCGCGCAGTTAACCGTC GCGTAGAAGCAGAAGTAGAAGCTCAAGCTAAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTAGCCGCTTGTACTGAAAAGCCCGGCTCAGGCCGGGCTTTTCTTTGCCTGCGATTTGGCAGGGTGCTTGTTCAGACGGGCCTGGTGTCAGCTGGCATTC AGCTGCGCGTGGTCCATCAGGGTTTGATTCAGCAGCTCATTGCTGTAAGCCGCAACCGCGCCGATCACCAGAATGGCGGGGCTCTTCAGCTGGAAAGCGG CTGCGTCCTGTTGCATGGCATTCAGGGTGCTACGGCATTCGCGCTGCCATGGCAGCGAAGCGTTCTCGATCATCGCCACCGGCATCTCGCCACTCATTCC GCCTGCCAGCAGGCTCTCGCGAATTTCCGCCAGTTTCGCCACGCCCATGTAAACCACCAGGGTGGTTCCGCCTTGCGCGAGCGCTTGCCAGTTGAGCGTG CTGTCATCCTGAGTGTGGGCGGTGACCAGTGTCACGCCACGGCTTATACCGCGCAGGGTCAGCGAAATGCCGCACTGTGTTGCACCAGCAAGACCCGCTG
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| Amino Acid Sequence |
>porin
MKLKNTLGLAIGTIVAATSFGALAQGQGAVEIEGFAKKEYYDSDRNFKNDGNLFGGSVGYFLTDDVELRLGYDEVHNVRSDSGKNIKGADTALDALYHFN NPGDMLRPYVSAGFSDQSIGQDARRGRDGSTFANIGGGAKLYFTDNFYARAGVEAQYNIDQGNTEWAPSVGIGVNFGGGSKKVEAAPAPVAEVCSDSDND GVCDNVDKCPDTPANVTVDADGCPAVAEVVRVELDVKFDFDKSVVKPSSYGDIKNLADFMQQYPQTTTTVEGHTDSVGPDAYNQKLSERRANAVKQVLVN QYGVGASRVNSVGYGETKPVADNATEAGRAVNRRVEAEVEAQAK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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