Pseudomonas syringae pv. syringae B301D-R, PSSB301D_RS22500
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. syringae str. B301D-R B301D_Contig05, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTGAGACCGGAACACTTTCCCATTGCCACCGACTCGACAAGCCATCCGGCTGGTCTTTCACTGCGTGAGCGCATCGAACAGTTCGAGCGTGGCGTTCTGC TTGAGAGTCTGCGCGACAGCGGCGGTAACCGGAGCCTTGCAGCACGCACGTTAGGGGTGTCGCGGCGCACGCTGCTTTACCGCCTGGCACATCTAAAGAT CGGTGCTGCTCATGGACGGCGTACCTAGCCACTCAATAATCACGTTTTAGTTAATTTCTTGTCTGGAGACGTTCCAATGAACTTTCATTGTTGGCGCACT GTGCCTATCACATTCGTTGCGCTGATGTGCCTTGGAGGGTGCAAAGGTCATTTCAAGTTCAGTGATGATCAATACCGCGCGCTGGGCAGTCCAGAACCCT CCATCCCACTGAATGCGTTGCGGCAGGACTCGACTCCTGAAAAAGAGATGTCGGCGTCGCGTGCTTTTTCGATTGCTGCCCTGCGTCAGGATTTCCAGAA
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| DNA Sequence for Gene |
>PSSB301D_RS22500
ATGATCTCGGTGAGCTCTTGTGTTACCCGAGTCTTCCAAAAGGTACTGATAGTACTTTTGGTTTTGATCTCAGGTTGCTCTGCACTGTCGCCGTACTCAA CGCAGACACGTCTGGATATCAGACTGAGCGCGAATGATCGACTGAATCCCGATGTGAATGGCAGACCGTCTCCGGTTGTTTTCAAGCTGCTTGAACTTCG GCGTCCCGTGACGTTTGAGAGCATGGATTTTCTCTCGCTTTATAAACGCACCGGGCAGGCGTTGGGAAATGATCTGGTGGCCAGCGAAGAGTTTGAACTT CGTCCTGGCGACAGTATTGAGTTGAAGCTGAAGCTCGACCACAGCAGTCGTTATATCGCTGTGCTAGCGGCTTATCGCAACCTGTCCGAGGCTCGCTGGC GTCAGGTGATTCAAATACTCCCCAACCAACAGAACAGCGCTGTTTTTGTATTGGGGGATTCCGGCCTGCAACGGGCAGACAGCCCAACTCGCACAGGAAA TTCACTATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ATTCGCACAAGGTTATCTGGCAGGAAGGCATGCTGCTTCGCCCGCAGCACTTTCAGCATCACGATCGTTACTATGACGATCAATTGCGGATTCAAACTCA GTTGGCAGGCGCCTACAACTGGGGCTTTACAGCTCTGGAAATTGATCCGCAATTTCTGGGTTCGGGGCAGATCGTGATTGCCCAGGCCTCGGGCATCCTG CCGGACGGCAGTGTCTTCGATATACGCGGCCATGAGAGTCCTTTGGCGCTGGATATTCCTCCCCATACTTCAAACGTGTCGGTGTACCTGGCACTGCCGA TCGTGGCGGGCAATTGCATTGAGTCTCGCAGTCATGAACAGCCGGATGTGGTCGCACGGTTTACAAGCTATTCAGCGAGCATCTGCGATTCAAACGCCGG TGAAGACCGTTCCACGCCAGTGCTGTGCGCCCGTCCGGAGTTTCGGTTGTTAATGGGGGAGCCCCAGGGAGAGCACACCTACAGCATGCTCAAGGTCTGC
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| Amino Acid Sequence |
>type VI secretion protein
MISVSSCVTRVFQKVLIVLLVLISGCSALSPYSTQTRLDIRLSANDRLNPDVNGRPSPVVFKLLELRRPVTFESMDFLSLYKRTGQALGNDLVASEEFEL RPGDSIELKLKLDHSSRYIAVLAAYRNLSEARWRQVIQILPNQQNSAVFVLGDSGLQRADSPTRTGNSL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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