Pseudomonas syringae pv. syringae B301D-R, PSSB301D_RS23270
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. syringae str. B301D-R B301D_Contig04, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTGGTGCTGGGGATCCTCTACGAAAGCTACATTCATCCGCTGACGATCCTTTCGACGCTTCCGTCCGCAGGGGTTGGCGCATTGCTGACGATCTATGTGC TGGGCAGCGAATTCAGTCTGATCTCCCTGTTGGGGCTGTTCCTGCTGATCGGCGTGGTCAAGAAAAACGCGATCATGATGATCGACCTTGCCTTGCATCT GGAACGCGAACAGGGAATGACGCCGCAAGAGTCGATCCGCAGTGCCTGCCTGCAGCGTCTGCGGCCCATTCTGATGACCACGATGGCCGCCATCCTGGGG GCTTTGCCGCTGCTGCTGAGCACCGCCGAAGGCGCTGAAATGCGCAAGCCGCTGGGCTTGACCATCATCGGCGGCCTGATCTTCAGCCAGGTCCTGACCC TTTACACCACTCCGGTGGTTTACCTTTATCTCGACCGTCTGCGCCATCGTTACAACAAATGGCGTGGCGTGCGCACCGATGCTGCTCTGGAAACTCCGCT
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| DNA Sequence for Gene |
>PSSB301D_RS23270
ATGACCGAACGCCTGGCATTCACCTCCCGCCCGACAAGGCTGATTCGTCCATTCGCGCTGGGGCTTTGTGTGGTGCTGCTCAGCGCCTGCGCTGTGGGTC CGGATTACCAGAAGCCGTCCATGGCCGCACCCGCGCAGTTCAAGGCTGCGCAGGGCTGGCGTACGGCGACGCCGAGTGACGGGATGGGCAAAGGTGCGTG GTGGGAGGTGTACAAGGACCCGCAACTGAACGCGCTGGTCGAGCGCCTTAACACGTCCAACCAGACCGTCGCCCAGTACGATGCGCAGTATCGACAGGCA CAGACACTGGTGCGCAGCTCCAGGGCTGCATTCCTGCCTACGCTTGACCTGACAACCGGCAAAACCCGCTCGGGGCAGGGCACAGGCACGTCGAATAGCG GCACGAGTGCCTCGGGGATTCGCAACAGTTACAACGCGCAACTGGGCGTCAGTTGGGAGGCCGATGTCTGGGGCAAGCTGCGTCGCGGGCTGGAGGCTGA CACCGCCAATGCTCAGGCAAGTCTTGCGGACCTGGCCGCGATGCGTCTGAGTCTGCAATCGGAGCTGGTACAGAATTACCTGCAATTGCGCGTGATCGAT GAACAAAAACGCCTGCTCGAATCCACAGTGGATGCCTATCAGCGCTCCCTGACGCTGACGCAGAACCAGTACCGGGCCGGTATCTCCGGAAGTGATGCTG TCGCGCAGGCGCAGACGCAGTTGAAAAGCACCCAGGCCGATCTGATTGATCTGGCCTGGCAGCGTGCGCAATTCGAGAATGCCATCGCTGTACTGATGGG CATGGCACCGGCAGACTTCAATCTGCCCGCCAGCACCTCGATTCCGCAGTTGCCGCAGATCCCGCCAGGCCTGCCTTCGCAGCTGCTCGAACGCCGACCT GATATTGCTGCAGCCGAGCGCTCTGTAATGGGCGCCAATGCCAACATCGGCGTGGCCAAGGCGGCTTATTATCCGGACTTCACGCTGAGCATGAGCGGCG GTTACAGCAGCAGTACCTTTGCCAACTGGATCAGCCTGCCCAACCGCTTCTGGTCGGTAGGCCCGCAGCTGGCGCTGACCCTGTTCGACGGCGGCAGGCG CTCGGCCGAGGTTGATCGTACCGAGGCCGTGTATGACCAGACTGTTGCCCAGTACCGGCAGACCGTGCTGAACGGTTTTCAGGAGGTCGAGAACTATCTG GTTCAGCTCAAGGTATACGAGCAGGAGGCTGCGGTGCGCCAGGAAGCGCTGGTCTCGGCTCGTGATTCGCTGCGCCTGACCAACAATCAATACAAGGCCG GGCTGATCGGTTATCTGGACGTCGTCAATGTTCAGGCGACTGCCTTGAGCAACGAACGCAGTGTGCTCAGCGTGCTGCAAAGCCGGTTGATTGCCAGCGT TCAATTGATCGCCGCACTGGGCGGGGGCTGGGATGCCGAAACAGGTTTGACGCTCCGGGAATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GTATTTCGGGTTCAGAACGCAGATTTTCAGTGGAACTGTTCGCAGTAAACGAAAAAATAATAGCTATTCGCCAGCTTTGCGACCAAGTGCCGCGACATTC GGCCGCTAATGCGTACAATCACCCGCACAAGATCGGCATGGACGCGCTCATTGGTTTCCAGGTGCGTTTATGTTGATTGGCAGCTACATCCCCTCACTCG TCGTCATCTCGATTCTCGTCGCTATTCTTGCCGCCTATACGGCCCTCGATCTGGTTGGCCGCATCGTTTCGGCCAGGGGCCGTGCCGTTCACCTATGGAT CGCGGGAGGCGCTGTCGCGATGGGCGTCGGCACCTGGTCGACGCATTTCATCGGTATGCTGGCGTTCGTATTGCCCATCGACCTGGGCTACGACGTGCCA CTGGTGCTGCTTTCGCTGTTGATCGCCATCGGCTTTTCAGGGTTCGCCCTGTGGCTCGCCACTCTGCCGCGATTGCCGGCACTGCAACTGAGCCTGGGGT
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| Amino Acid Sequence |
>RND transporter
MTERLAFTSRPTRLIRPFALGLCVVLLSACAVGPDYQKPSMAAPAQFKAAQGWRTATPSDGMGKGAWWEVYKDPQLNALVERLNTSNQTVAQYDAQYRQA QTLVRSSRAAFLPTLDLTTGKTRSGQGTGTSNSGTSASGIRNSYNAQLGVSWEADVWGKLRRGLEADTANAQASLADLAAMRLSLQSELVQNYLQLRVID EQKRLLESTVDAYQRSLTLTQNQYRAGISGSDAVAQAQTQLKSTQADLIDLAWQRAQFENAIAVLMGMAPADFNLPASTSIPQLPQIPPGLPSQLLERRP DIAAAERSVMGANANIGVAKAAYYPDFTLSMSGGYSSSTFANWISLPNRFWSVGPQLALTLFDGGRRSAEVDRTEAVYDQTVAQYRQTVLNGFQEVENYL VQLKVYEQEAAVRQEALVSARDSLRLTNNQYKAGLIGYLDVVNVQATALSNERSVLSVLQSRLIASVQLIAALGGGWDAETGLTLRE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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