Pseudomonas syringae pv. syringae B301D-R, PSSB301D_RS24655
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. syringae str. B301D-R B301D_Contig01, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGCCCAGCACACCGATCTTGGCACCGGGGAAGAAAGACAGAGAGATGTTTTTCAGGATTTCACGCTTCGGCGGCACAACTTTGCTCAGCCGATGCATGGT GTAGACGTATTGAGCCATGAAATGAAAACCTAGCGTCTGTAATGAGGACCGATTTGGGTAACGAGCTTAAAGCTCCGGCCGGAAAAAAGCTTTTATTTGT CCTTGAGACTTGCCGCGGGACCGTTCCGAGCCTTGAATAAACTCAGTTGGAAACCTGTCGGGCAGTGCTGGCAAATATAAAGCCTGATCGATATTGCAAA AAGTGGAGTCACTCATGCAGGAGTCGGTGGAGACCACGCGTTGCGCAAAGCTACCCGAATGCTGCGTGCAGGGCAAACGATACGGCGCAACGGGACTGGC ACTTTGCCACAACTAAAGGCATGCTAGCCGCCCTCTTTGGGCGACCCGCCTATTTTACATAAAGCATCACTGCTTCAGTCCAGCAGTCAGGAACAGCGAT
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| DNA Sequence for Gene |
>PSSB301D_RS24655
TTGCCCACTTCAACGCCTCTGTCGTCATCCAGTGTCGCTACAGACAGTGCGACCAGGCCTCTGCGTGGGTCAGTGAAAGGCATGCTGGCGGGCCTGGTTC TGGTGGTGCTTGCCCTGTTGCTCTGGCAACTGATCGAGCAGTTTCACCAGACTCAGGAGCGTCAGCGTCAGCGCAGTCTGGAGTACAGCGTGCAGCTGTC CGACCGGATGAGTCTGAACATGGCGCTCAAGGCGCAGATCGCCATGAACCTGCTGGACGAGGCGCTCTCCTCCGGGGAGCAGCTGGAGCAGCCGACGACG CTGGTGAACCTGCGCACTGCCCTGCCCGCGCTGCGCAGCGTCGCCCGCCTGAACCCGGCGGGTGAGATTGTCAGTGACAGCGCCGAGGCCTCGCGCGACG CTGAGTTTCTCGGACGGGCCATGAAACAGGCGCGAGGTCGCCCCTACTTCTATACCAACTCCGAAGACGGCAACCAGATTTATATACTGATTCGCCTGGG CAACGGCGTGAGCGGCGATTACTGGGCATTGCGCGTGGCGCCCGACGCTTTGAAGGAACTTGCCAGCCAGCCGGCTCAGGACTTTCAGTACCTGTGGCGT CTCGAACAGCGCAAGACGCAGCGGGTCATTCTCCATGAACCGGTGGCCGCCAACGACGCGGACAGTGGCCTGTCCGACACCATTCTGCTTCAGCCGCTGA GCAACAGTGACTGGCAACTGCGGGGGCTGTTCGACACCTACAAGGCCCGCAGCGAACTGCTTGCGCCGCTGATCGGCAAGTGCCTGATCGGCGTGCTGCT GTCGATCCTGCCGTTGATCGCGCTGATGAGCCTGCGCAGACGCCAGCGCCAGATGCTGCAAAGCCGACGCCGCTACCGGGATATCTTCGAGGGCGCGGGC GTCGCAATCTGTGTCATGGACATGTCCGGCCTGCAGGAACAACTGGAAGCACTCGAGGTCAGGAACGGCGAGGACTTCGAGCGTCTGCTCAAAAGCCAGC CCGCCTCCCTGAAACGCCTGTTGCAGCAATTGCGCATCAGCGAACTCAACGAAGTCGCTCTGAGCCTGCTGGACATCGAGCACCGCGAACAGGCATGGCA ACCGTTGATCGAGGGTGAATCGCGCTCGCGTCCGGGGGTCGGCATTCCGATCATTCAGGCGGTTCTCGCCGGACAGCCGCGACTGGAACTGGAAATCTGC CTGACCCGTGCAGGCGGTCAGGATCAGCACCTGTGGCTGGTCATGCGCCTGCCCGAGACACGCGGCGACTTCGATGCCGTCATTCTCAGCATTGGTGATA TCACCAGCCGTAAACAGGTCGAGCTGTCGTTGCTGGACCGCGAGAGCTTCTGGTCCGACGTGGTCCAGACCGTTCCCGACCATCTGTACGTTCAGGACGT GCTCAGCCAGCGGGTGATCTACAGCAACCACCACTTCGGCTACACGCTGGGTTACAGCAAGTCAGAACTGCACGCCATGGGCGAGTTCTTCTGGGAAGTC CTGCTGCACCCCGACGACGCCCGACACTATCAGGACATGCGCCTGCGCCAGCGTCACCATGGGCACAATGAATTACTGCAAAGCGTGTTGCGCTTTCGGG ACCGCGAGAGCAACTGGCGGAGCTTCGACATTCGCGAACAGGCACTGGCCTGGGACGCAGAAGACCGGGTCACCCGCATCATCGGCATTGCCAAGGACAT TACCGAGCAGGTCGCGTCCAGCCAGTCGCTGCGTGACAGCGAACAGCGTTACCGCATGCTCGCCGAAAGCATCAGTGACGTGATTTTCTCCACCGACGGC CGGCTGGCAGTCAACTACGTCAGCCCTTCGGTAGAACGTGCGCTGGGCTACAGCGCCGAGTGGATCATACAGAACGGCTGGTCCGCCGCGATTGCCAACC CCCAGCAAATAGTCGGTTTTGATGCGCTCATGAGCCGCATCGACAAGGTCCTCGACAAACCTCAGGAACTCGCCAGGCTGCGCGAAGAAGTCACCACCCG AATGTTCCTGTTCGACTGCCTGCGTGCCGACGGTCGCAAGATCCCGGTGGAACTGCGCGTGGTGCTGGTGTGGGGCGAACACGGCAATTTCGAGGGCATC TTCGGCGTGGGCCGGGACATCAGTCAGCAGCGTCGGGCCGAGAAAGACCTGCGCATGGCTGCCACTGTATTCGAGCATTCGACATCCGCCATCCTGATTA CCGACCCCGCCGGCTATATCGTGCAGGCCAACGAGGCCTTTACCCGTGTCAGTGGCTATGAAGTGGCTCAGGTGCTCGATCAGTTGCCGGGCATGCTCAC CGTGGAATCAGAACAGGAAACCCGCCTGCGCCACATTCTCAGGCAGTTGAACGGACAAGGCACGTGGGAAGGTGAAATCCGGCTCAAGCGCCGTAACGGC GAACACTACCCGGCCTGGGTCGGCATTACCGCAGTCCTCGACGACGAAGGCGATCTGGCCAGCTACGTGTGCTTCTTCAGCGATATCAGCGAACGCAAGG CCAGCGAGGACCGTATCCACCGTCTGGCCTACTACGACGCGCTGACTCACCTGCCCAACCGCACCCTGTTCCAGGATCGCCTGCATTCGGCGCTGCAGCA CGCCGAGCGCCAACAGGCCTGGGTCGTGCTGATGTTCCTCGACCTCGACCGCTTCAAACCGATCAACGACTCCCTGGGGCATGCCGCGGGCGACCGGATG CTGCAGGAAATGGCCACGCGGCTGCTCGCCTGTGTGTCGGTGGATGACACCGTGGCCCGCATGGGCGGTGATGAGTTCACCCTGCTGCTGGAACCGGATG AAAGCCGTGAAGCGGCGCTGAATCGCGCCATTCATGTCGCCGAACGCATTCTGACCAGCCTGATCACGCCGTTCGTGCTGGAAGGCCGCGAGTTCTTTGT GACCGCCAGTATCGGCATCGCACTCAGCCCGCAGGACGGCAAGGAACTGAGTCAGTTGATGAAGAACGCCGACACGGCGATGTATCACGCCAAAGAGCGC GGCAAGAACAACTTCCAGTTCTATCAGGCCGACATGAACGCGACCGCGCTGGAGCGTCTGGAGCTGGAAAGCGACTTGCGCCACGCCCTGGAGCAGAAGG AGTTCACCCTCTTCTACCAACCGCAGTTCAGCGGCGACGGCAAACGCCTGACGGGCGCGGAAGCCCTGTTGCGCTGGCGTCATCCGCGCCGCGGGCTGGT GCCGCCCAACGACTTCATCCCGGTGCTCGAAGAGCTCGGGCTGGTCGTGGAAGTCGGCGACTGGGTCCTGGCCGAAGCCTGCCGTCAACTCAAGCACTGG CATCAGGCCAGGGTTCGCGTGCCCAAGGTGTCGGTCAACATCTCGGCACGGCAGTTCTCGGACGGTCAGCTCGGTAAACGCATCGCCCACATACTCGAAC AGACCGGCCTGTCCCCCGCCTGCCTGGAACTGGAGCTGACCGAAAGCATCCTGATGCGCGAGGTCAACGAGGCCATGCAGATACTCGATGGCCTCAAGAA CCTCGGCCTGAGCATCGCCGTCGATGACTTCGGCACCGGCTACTCGTCGCTGAACTACCTTAAACAGTTCCCGATCGACGTGCTCAAGATCGACCGCACC TTCGTCGATGGCCTGCCGTCCGGCGAGCAGGACGCCCAGATCGCCCGCGCCATCATCGCCATGGCCCACAGCCTGAACCTCTCGGTGATCGCCGAAGGCG TAGAGACCCACGAGCAACTTGAGTTTCTCCGCGAACACGACTGCGACGAAGTCCAGGGCTACCTGTTCGGCCGCCCGATGCCACCTGCCCAGTTCGAAGC GCAATTCAGCAACGACGCGTTGTTCATGCTGGATTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGGCCAGTTCTCGCAACGTCGCCATCGTCCATTTGAACGATAGCCGAACCCTTGAATATGAGTAGACTTGAGCCACTGCCTCGCACAGCGTCGACGACAG CGAGCGCTCTACCCATAACAAAGAACACAAGGGGGTAGCATGATCAGCGATACAACGTCCCTGGACAGTGTTTCCTGGCAGGTCGTGGAAGCCTTGAACA AGGTGATTCTCGCGCTTCAGACCGAGGTCAGCAGCGCGTCTATCTCTACGTTTCATCAACAGGCGCTTGAGCGGGTGCGCGCGCTGGTGCAGTTCGACAA GGCCTGGTGGGGCAGATCCACCTGGCGTGACAACTGGCCCGTCGAGCACAGTTCCTTTTTGCTCGGCCTGCCCTCCGGTTACGCCGCCGAGTGGGAGCAA CTCAAGACCTCGGATGCCAGCGTCGGCAGAATGCATCAGACCCAGGGCGTCTGTCAGGTCATTCACTGCACGGCAGCGGATGCCCCTCCCGCGCTTGCCG
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| Amino Acid Sequence |
>diguanylate phosphodiesterase
MPTSTPLSSSSVATDSATRPLRGSVKGMLAGLVLVVLALLLWQLIEQFHQTQERQRQRSLEYSVQLSDRMSLNMALKAQIAMNLLDEALSSGEQLEQPTT LVNLRTALPALRSVARLNPAGEIVSDSAEASRDAEFLGRAMKQARGRPYFYTNSEDGNQIYILIRLGNGVSGDYWALRVAPDALKELASQPAQDFQYLWR LEQRKTQRVILHEPVAANDADSGLSDTILLQPLSNSDWQLRGLFDTYKARSELLAPLIGKCLIGVLLSILPLIALMSLRRRQRQMLQSRRRYRDIFEGAG VAICVMDMSGLQEQLEALEVRNGEDFERLLKSQPASLKRLLQQLRISELNEVALSLLDIEHREQAWQPLIEGESRSRPGVGIPIIQAVLAGQPRLELEIC LTRAGGQDQHLWLVMRLPETRGDFDAVILSIGDITSRKQVELSLLDRESFWSDVVQTVPDHLYVQDVLSQRVIYSNHHFGYTLGYSKSELHAMGEFFWEV LLHPDDARHYQDMRLRQRHHGHNELLQSVLRFRDRESNWRSFDIREQALAWDAEDRVTRIIGIAKDITEQVASSQSLRDSEQRYRMLAESISDVIFSTDG RLAVNYVSPSVERALGYSAEWIIQNGWSAAIANPQQIVGFDALMSRIDKVLDKPQELARLREEVTTRMFLFDCLRADGRKIPVELRVVLVWGEHGNFEGI FGVGRDISQQRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFTRVSGYEVAQVLDQLPGMLTVESEQETRLRHILRQLNGQGTWEGEIRLKRRNG EHYPAWVGITAVLDDEGDLASYVCFFSDISERKASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQHAERQQAWVVLMFLDLDRFKPINDSLGHAAGDRM LQEMATRLLACVSVDDTVARMGGDEFTLLLEPDESREAALNRAIHVAERILTSLITPFVLEGREFFVTASIGIALSPQDGKELSQLMKNADTAMYHAKER GKNNFQFYQADMNATALERLELESDLRHALEQKEFTLFYQPQFSGDGKRLTGAEALLRWRHPRRGLVPPNDFIPVLEELGLVVEVGDWVLAEACRQLKHW HQARVRVPKVSVNISARQFSDGQLGKRIAHILEQTGLSPACLELELTESILMREVNEAMQILDGLKNLGLSIAVDDFGTGYSSLNYLKQFPIDVLKIDRT FVDGLPSGEQDAQIARAIIAMAHSLNLSVIAEGVETHEQLEFLREHDCDEVQGYLFGRPMPPAQFEAQFSNDALFMLD
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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