Pseudomonas putida S16, PPS_2839
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida S16 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TGTGTACAGGGATGACACATGAGTAACCAGGCCCGCCTGCTGCCCTCGCTGCTCGACCGACTGCTGGACGACCGTCCGTACCAGTCGGCCGAGCCAGCCG TGCAACGCACCTGCTCGTTGAGCGAGTACAAGGCCAGCATCGTCCGTGACCTGGAGGTACTGGTGAACACTCGCCAGAGCCTGGTCGCCGAAGAGCTGGA GGGCTACAGCCAGCTCGGTGGTTCCATCCTCGAATACGGCATGCCCGACTTCATCAGCCGCAGCGTGCTCGACCCGCATGATCGGCGCCTGATCCAGCAG CAACTGGAACGGGCGATCAGCACAGGGGACCGACGTTTTCGCCGTGTCCGCGTGCAGCTGCTGGCCCAGCAGAACGGCCACCGTATGTTGACCTTCCGCG TGGACGCCGTGTTGCGTCTGCAGGACATCAGCCGCCAGGTGTCATTCGACGCCGTGCTGCAGGTCAACACCCAGGAATACAAAGTGCAGAACCTCAACTG
|
|
| DNA Sequence for Gene |
>PPS_2839
ATGCTCGACGAACTGCTGCCCTACTACGAAAAGGAACTGTCGCACCTGCGCTTCCTCGGCCAGGAGTTTGCCGCGCAGTACCCGAAAATCGCTTCGCGGC TGTTGATCGAGGGCGACAACTGCGAAGACCCGCACACCGAGCGCCTGATCGAGGCGTTCTCGTTCCTGTCTGCGCGGGTGCACAAGAAGCTCGATGACGA GTTTCCGGAAATCGTCGAATCCTTCCTCGAGGTGCTGTACCCACACTACCTGCGCCCTACCCCATCGATGTCGATTGCCGAGCTGAGCCTGGGCAAGCAC GAGAAAGTCACCGAAGCCTACCGGGTGGCGCGCCATACCGAAATGCATGCCAATGCCGTGGAAGGTGTGGTGTGCAAGTTCCGCACCTGCTACCCGGTTG AGCTGTGGCCGATTGCCGTGCAGCAGGCCTCGTTCGCCGAACTGGAGCGTTCGGCCTTCAACGGCCACAGCGCCGACCTGGTCGCACGCCTGCGCATCCG CCTGGCAGCCACCGGCGATGCCCTGTTCGGGCAGATGGAGCTGGACCGCCTGCGGTTCTTCCTCGACGGCGAGGCGACCCTGATGCTGCAGCTGTACGAA CTGCTGTTCAACAACCTGGCAAAGGCCACCCTTAGCTTCCAGGACCAGGGCCGCAGCCGCGAAGTGGCCTTGCCGGCCGATGCCCTGAAAGCCGTGGGCT ACGCCCGTGACGAAGGCCTGGTGGACTACTCCGAGCGCTCGTTCCTGGGCTACCGCCTGCTGCACGAGTACTTCACCTTCCCCGACAAGTTCATGTTCTT CGACCTGAACGGCTTTGCCCGCATTCTGCAGGGCAAGGCCATCGAGCAGGTCGAGATCAACTTCTATTTCTCCGACTACGACCTCAGCGAGCGCCTGGCG CGGCTGACACAGAACATCGGGCGCAACAACTTCAAGCTCAACTGCACACCGATCATCAACCTGTTCCGCCAGCAAGCCGAGCCGATCAAGCTGACCCACA CCCAGCACGAATACCCGGTCACTCCCGATACACGGCTGCACAACGCTGCCGAAGTCGTCTCGATCGACCGCGTACGGCGGGTGCGCAAACTCGGCGGCAT CGACCAGGTCGCCACCTGCCACCCGTTTTTCGAACCCCGTGGCGAGCAGGACCCGCACAGCAGCTTCTGGGTGGCGCGCCGGCGCATCCAGGGTGACGCC ACCGCCATGAGCATCCGCGTGGTCGACCGCGACCTGGAGCTGATCGACGCCAGCAGCGACACCCTCAGCATCGGCCTTACCTGCAGCAACCGCGATGTAC CGCTGATGCTGCCGTTCGGGGGCGAACGTGGTGACTTCAACATTCCCGCCAACTCGGTGATCAAGGATATCCGCTGCCTGCGCAAGCCCACCGCCACGGT GCGTGTGCCCCTGGGCAAGGGCCTGATCTGGCGGTTGATCGCCCACCTGTCGCTGAACCATATGTCGCTGGTCAGCCAGGGCCGTGAAGTGCTGCTGGAG CTGTTGTCGCTGTACAACTACCGCAATGTTTCCGCCATTCGCAAACAGATCAACGGCATCAAGGCGATCAGCAGCGAGCCGGTGGTCGCACGCATCGGCC ACCCGCGGCCGAACTTCGTACGTGGCGTCGGCATCACGCTGACCCTGGATGAAAGCCAGTTCATCGGCAGTGGCGTGTACCTGTTCGGCATGGTGCTGGA CCACTTCTTCGGCCAGTACTGCTCGATGAACAGCTTCACCCAACTGACCCTGCGCACCCAACAACGAGAAAAGAGAGTCGTCCAATGGCCAGCACGCACC GGCGATCAGCCCCTGGTCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TCGATCAGGCCCGAGCCGAGCCGCACCGATTCGAATTCTTTCAATTGGTGCGCCTGCTCCGCCTGCACTACAGCCGTACCGGGCGCATGGACCTGGCAAC CCGGCCGCACGAAGACCCGCTGCGTTTTCGTACCCAGCTGTCGCTGGCGTTCCCGGCCAGCGAGGTCAGCGACCTGCACTTCGAGCGCGAAGGCAAGGTG TCGCCGGCCGGCTTGCCGCTGTCGGAAGTGCAGGTCACCTTCATGGGCCTGGTCGGGCCGTCAGGCGTACTGCCGCGCCCGTATACCGAGCTGCTGCTGG AGCGCCACGTGCACTATCGCGACGATGCCGCCCACGCGTTTCTCGACATCTTCTCGCACCGCATGACCACGCTGTTCTACGAGGCCTGGCAGAAGTACAA ATTTCATATCGAGCACGAACGCAATGGCACTTCGGGCTTCGATGGCTACCTGCTCAACCTGGTCGGCCTCGGCCCGCGCGCGCAGCAACTCAAGTTCGAG
|
|
| Amino Acid Sequence |
>type VI secretion protein
MLDELLPYYEKELSHLRFLGQEFAAQYPKIASRLLIEGDNCEDPHTERLIEAFSFLSARVHKKLDDEFPEIVESFLEVLYPHYLRPTPSMSIAELSLGKH EKVTEAYRVARHTEMHANAVEGVVCKFRTCYPVELWPIAVQQASFAELERSAFNGHSADLVARLRIRLAATGDALFGQMELDRLRFFLDGEATLMLQLYE LLFNNLAKATLSFQDQGRSREVALPADALKAVGYARDEGLVDYSERSFLGYRLLHEYFTFPDKFMFFDLNGFARILQGKAIEQVEINFYFSDYDLSERLA RLTQNIGRNNFKLNCTPIINLFRQQAEPIKLTHTQHEYPVTPDTRLHNAAEVVSIDRVRRVRKLGGIDQVATCHPFFEPRGEQDPHSSFWVARRRIQGDA TAMSIRVVDRDLELIDASSDTLSIGLTCSNRDVPLMLPFGGERGDFNIPANSVIKDIRCLRKPTATVRVPLGKGLIWRLIAHLSLNHMSLVSQGREVLLE LLSLYNYRNVSAIRKQINGIKAISSEPVVARIGHPRPNFVRGVGITLTLDESQFIGSGVYLFGMVLDHFFGQYCSMNSFTQLTLRTQQREKRVVQWPART GDQPLV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|