Pseudomonas putida S16, PPS_2631
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida S16 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CGAGCCGGACTTCTGGTGGCTGCTGGGGATCATGGCGCTGTTCTCCTGGCTGACGCTGGTCGACGTGGTGCGCGCAGAGTTCCTGCGCGGTCGCAACCTG GAGTACGTCAAGGCCGCCCGAGCGTTGGGGTTGCCAGACAGCCAGGTAATGCTGCGGCACATCCTGCCCAATGCCATGAATGCGACCCTGACCTATGTGC CATTCATGCTGACCGGGGCGATCACCACCCTGACTGCGCTGGATTTTCTCGGTTTCGGCATGCCGGCCGGGAGTGCTTCGCTGGGAGAGCTGGTGACCCA GGGCAAACAGCACCTGGAGGCGCCGTGGCTGGGCTTTACCGCGTTCTTTGTGCTGGCGGTGATCCTGTCGCTGCTGGTGTTTATCGGGGATGCCTTGCGC GAGGCGTTCGACCCCAGGGGATAGGTTTTCAGGTCTGGCCTCTTCGCGGGTAAACCCGCTCCCACAGGGTCACCACAAATCCTGAGGCTGTGGGGTACCT
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| DNA Sequence for Gene |
>PPS_2631
GTGGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTTTTACAGATTTCAGGATTTCTACCCATGCACGACAGCGACAGCCTCAAGGACTACCCCCAGG TACGGCAACTGGCGATCCGCTCGCTGTTCGAGATCATCGAGCAGTCCAGCGAGGGCACGGTAATCGTCGACCGCCAGGCGCGCATCGTCTGGATGAACGA GCGCTACGCCCGGCGCTTTGGCCTGGCCGACGCCGCCAGTGCCATCGGCCAGCCATGCGAGGCGGTGATCCCGGGCAGCCTGATGCGCGAAGTAGTGAAC AATGGCCGGCCAATCCTGCTGGACATGCTCGATACCCCTAACGAGCCGCTGGTAGTGATGCGCCTGCCCATCCACGACGACCAGGGCGCGCTGATCGGTG CCATCGGCTTTGCCCTGTTCGATGAATTGCGCAGCCTGTCGCCGCTGCTCAAACGCTACTCCAGCATGCAGCAGGAACTGGCCTCGACCCGCTCGCAGTT GCGCGCTCGCCAGGCCAAGTACAGCTTCGCCCAGTTCGTCGGCAGCAGCGCCGCCAGCCTGGAGGCCAAGCGCCGCGCCCGGCGTGGCGCGAGCAGTGAT TCGCCGGTGTTGCTGCTGGGCGAAACCGGCACCGGCAAGGAACTGCTGGCCCATGCCATCCATGCGGCGTCGGCGCGGGCGCACAAGGCGTTTGTCAGCA TCAACAGTGCGGCGATCCCCGAAACACTGCTGGAAGCCGAATTCTTCGGCACCGCCCCCGGCGCCTTTACCGGCGCCGACCGCAAGGGCCGCACCGGCAA GCTGCAACTGGCCGAAGGCGGCACGCTGTTCCTCGACGAGATCGGCGACATGCCGCTGGCCCTGCAGAGCAAGCTGCTGCGGGTGTTGCAGGAAAAGGAA TACGAGCCGGTAGGCTCGAACCAGATGCTGCGCAGTGATGTGCGCATCATTGCCGCCACTTCCATCGACCTGCAGGCCGCCATCGCCCGAGGGGCATTCC GCGCCGACCTGTATTACCGGCTGAATGTGCTGCCGATCGAGGTGCCACCACTGCGGCAACGGCTGGAGGACCTGCAGGCGCTGTGCGAGGCCATCCTGGG CGAACTGGGCAGCCAGTATGAGCTGGAGGCCGAAGCGCAGCAGCTACTGGCGCGGCATGCATGGCCGGGAAACATTCGCGAGCTGCGCAATGTGCTAGAG CGGGCCACGCTGCTGGCGGATCAGCCGCGGCTGGGGGTGGCGGATCTTCGGGCGGCATTGGGGCCGTTGAGCCCGGTGGCGGGTGAACCTATGCGGCAGA CTTACCGTGAGGCCTGTGAGGCATTTGAGCGCGAGCTGATTGTTGGGGCACTGGCCGAACATGGGGGAAATGTGCCGGAAGCTGCGTCGGCGTTAGGACT GGGGCGGTCAACGCTGTATAAGAAGATGGTAGCGCTCGGTCTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GTGGAGACTTTTGTTTCCATTTCGAGACTGTCGCGAGGGCTTTGCCCTCGATCGCGACACAAGGCCGCTCCTGCAGGAGATCGCGGTGCACATGTAGGAG CGGCCTTGTGTCGCGAGGGGCCGCAAAGCGGCCCCAAAATCTCAAGACAGAGACAAAAATTCAGAAGAAAACAAAATACCTATATAAATCAGTGAGTTAA AAACTGGCACGATTCCCGCTATCTCCTGCTCACCGATAAAAACAAGACTCACCCAGGAGACCCACCCCGATGACCGTGCTCATCGCCCTCGCCGCTCTGG CCCTGCTGATGCTGGCTGCCTACCGCGGCTACAGCGTAATCCTCTTCGCCCCCATCGCCGCCCTCGGTGCGGTACTGCTCACCGACCCGTCCGCCGTGGC CCCCGCATTCACCGGGGTATTCATGGAGAAAATGGTCGGCTTCATCAAGCTCTACTTCCCGGTGTTCCTGCTGGGCGCCGTGTTCGGCAAGCTGATCGAG
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| Amino Acid Sequence |
>sigma-54 dependent transcription regulator
MGAGLPAKRPALLLQISGFLPMHDSDSLKDYPQVRQLAIRSLFEIIEQSSEGTVIVDRQARIVWMNERYARRFGLADAASAIGQPCEAVIPGSLMREVVN NGRPILLDMLDTPNEPLVVMRLPIHDDQGALIGAIGFALFDELRSLSPLLKRYSSMQQELASTRSQLRARQAKYSFAQFVGSSAASLEAKRRARRGASSD SPVLLLGETGTGKELLAHAIHAASARAHKAFVSINSAAIPETLLEAEFFGTAPGAFTGADRKGRTGKLQLAEGGTLFLDEIGDMPLALQSKLLRVLQEKE YEPVGSNQMLRSDVRIIAATSIDLQAAIARGAFRADLYYRLNVLPIEVPPLRQRLEDLQALCEAILGELGSQYELEAEAQQLLARHAWPGNIRELRNVLE RATLLADQPRLGVADLRAALGPLSPVAGEPMRQTYREACEAFERELIVGALAEHGGNVPEAASALGLGRSTLYKKMVALGL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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