Pseudomonas syringae pv. actinidiae ICMP 9617, A250_RS07125
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. actinidiae ICMP 9617 chromosome Chr, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATCGGTGACAAACGGTCCGGTCCAGTAGTTATGCGGCCTACACGCATGGTGTGCGTTTCATACACAAACTACACACACTTTATCCACAGGCCGTGCGTTG CAATTCATGTCCAAAACGCATTATCTTGTAGCCCGACAGCGAGGGACACCCTACATGTAGGGTTTTCCGCAAAAAACCCAGCACAACTCAATCGAGAAAC TCAAGCACTTTTCTTGCGTTTGCGGGGTTGAAATTAAAGTCGTTTTCGTTACGCCTTCGTTCGCGCGGGGAGCAAAGCCGCGCAGTACACGGTTTGCAAC ATCGAACACGCATTCTTCATCAGTTTTTCAAAGGATCGGGCTTGGCCCGGTCCTTTTTGGCTTCAAAACCTGGCAGCGGAAAAACACCCCCCGCTGCCGC CTTCGTTTTGGAGCCTTGAGTCGCCTTTTGCGACTCACTGCTCGAAACGAAACGGTGGGCAGCAATGCCCGAACAAACTTAAAGGAACGTGGAGTCACAC
|
|
| DNA Sequence for Gene |
>A250_RS07125
ATGCAAACAGACACAACTCGCGAGAACTCGCCGACCGGCGCGCCGCAGGCAAGCCAGGCCCAACAGGATCTGTCTGCCACTGCCCCCGGTCAACTGCGCG TGATCAAGCGTAACGGTACTGTCGTCCCTTACACGGATGACAAGATCACCGTCGCCATCACCAAGGCGTTTCTTGCAGTTGAGGGCGGCAATGCTGCTGC CTCGTCGCGCATCCACGACACCGTTGCCCGCCTGACCGAACAGGTCAGCGCCACGTTCAAACGTCGCATGCCTTCGGGCGGCACCATCCACATCGAAGAA ATCCAGGATCAGGTCGAACTGGCCCTGATGCGCGCCGGCGAGCAGAAAGTTGCTCGCGACTACGTCATCTACCGTGATTCGCGTGCCAAGGAGCGTGCCG TTCGTGCCCCCGAAGACCAGGTTCAGGCTCACCCGTCGATCCGCATCACCCTCGCCGACGGCAGCTTCGCGCCGCTGGACATGGGTCGCCTGAACACCAT CGTTACCGAAGCGTGTGAAGGCCTGGCTGAAGTCGACGCCAACCTGATCCAGACCGAAACCCTGAAAAACCTGTACGACGGCGTGGCGCTGAAAGACGTC AACACCGCACTGGTCATGACCGCGCGTACCCTGGTCGAGCGCGAGCCGAACTACTCGTTCGTCACCGCCCGCCTGCTGATGGACACCCTGCGCGCCGAAG GCCTGGGCTTCCTCGGTGTCGCCGACAGCGCCACCCACCACGAAATGGCCGACCTGTATGCCAAGGCGCTGCCTGCCTACGTCGCCACCGGTATCAAGTT CGAACTGCTCAACCCTGTGCTGGCTGAATTCGACCTCGAAAAACTCGGCAAGGCCATCAACCACGAGCGCGATCAGCAGTTCACCTACCTGGGCCTGCAA ACCCTGTACGACCGTTACTTCATCCACAAGGATGGCGTGCGTTTCGAACTGCCGCAGATCTTCTTCATGCGCGTGGCCATGGGCCTGGCAATCGAAGAGA AAGCCCGTGAAGACCGCGCCATCGAGTTCTACAACCTGCTGTCGTCGTTCGACTACATGTCGTCGACCCCAACGCTGTTCAACGCCGGCACCCTGCGTCC ACAGCTGTCCAGCTGCTACCTGACCACCGTGCCGGATGACCTGTCGGGCATCTACCACGCGATCCACGACAACGCCATGCTGTCCAAATTCGCAGGCGGC CTGGGCAACGACTGGACACCGGTTCGTGCGCTGGGCTCGTACATCAAGGGCACCAACGGCAAATCGCAAGGCGTCGTGCCGTTCCTCAAAGTGGTCAACG ACACCGCCGTTGCGGTCAACCAGGGCGGCAAGCGCAAGGGCGCTGTCTGTGCCTACCTGGAAACCTGGCACATGGACATCGAAGAGTTCATCGAGCTGCG CAAGAACACCGGTGATGACCGTCGTCGTACCCACGACATGAACACCGCCAACTGGATCCCTGACCTGTTCATGAAGCGCGTCTTCGACGACGGCCCGTGG ACCCTGTTCTCGCCATCCGAAGTACCGGACCTGCACGACCTGACCGGCAAGGCCTTCCAGGAACGTTACGAGTACTACGAAGCGCTGACCGAATACCCGG GCAAGGTCAAACTGTTCAAGACCATCCAGGCCAAGGATCTGTGGCGCAAGATGCTCTCGATGCTGTTCGAAACCGGCCACCCATGGCTGACCTTCAAGGA CCCGTGCAACCTGCGCAGCCCGCAGCAGCACGTGGGCGTGGTTCACAGCTCGAACCTGTGCACCGAGATCACCCTGAACACCAACAAGGACGAGATCGCG GTCTGCAACCTGGGCTCGATCAACCTGCCGAACCACATCGTCAACGGCAAGCTGGACACCGACAAGCTCAAGCGCACCATCGATGTAGCCGTTCGCATGC TCGATAACGTCATCGACATCAACTACTACTCCGTGCCGCAGGCCAAGAACTCCAACCTGCGCCACCGTCCGGTCGGCCTGGGCATCATGGGCTTCCAGGA CGCGCTGTACCTGCAGCACATTCCTTATGGTTCCGATGCTGCCGTGCAGTTTGCCGACAGCTCGATGGAAGCGGTCAGCTACTACGCCATTCAGGCGTCC TGCGACCTGGCTGACGAGCGCGGTGCCTACGAGACGTTCCAGGGTTCGCTGTGGTCCCAGGGCATTCTGCCGCTGGACTCGCAACAGATCCTCATCGAGC AACGTGGCCAGAAGTACATCGATGTCGACCTGAAAGAATCCCTGGACTGGGCGCCGGTACGTGCCCGTGTGCAGAAAGGTATTCGTAACTCGAACATCAT GGCCATCGCACCGACCGCTACCATCGCCAACATCACTGGCGTGTCGCAGTCGATCGAACCGACCTACCAGAACCTGTACGTGAAATCGAACCTGTCCGGC GAATTCACCGTGATCAACCCGTACCTGGTTCGCGACCTCAAGGCCCGCGACCTGTGGGACTCGGTCATGATCAACGACCTCAAGTACTACGACGGTTCGG TGCAACAGATCGAGCGCATCCCGCAGGAGCTCAAAGAGCTTTACGCGACCGCCTTCGAAGTGGACACCAAGTGGATCGTTGACGCGGCAAGCCGCCGTCA GAAGTGGATCGACCAGGCTCAGTCGCTGAACCTGTACATCGCTGGCGCTTCGGGCAAGAAGCTGGACGTGACCTACCGCATGGCCTGGTACCGTGGTCTG AAAACCACTTACTACCTCCGTGCCCTGGCCGCGACCAGCACCGAGAAATCCACCGTCAACACCGGCAAGCTCAACGCCGTATCGAGCGGCGGCCACGGCC CGGACGACTCGGCGATCACCGCCCCTCGCCCGACCGAAGCCGCACCTGCCGGCCCGGCCCCAGTGCCAAAGGCATGCGCAATCGACGAGCCGGATTGTGA GGCTTGCCAGTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GGCAAACCCACCTCGCCCCCACAGCACAGGTATATCTGGAGATATACCTGTGAGAGATATACCTGTGGGAGCGAGCTTGCTCGCGAAGAGGCCGGTAAGG GAAACCTACCCTTACCACCCGCCTCCTCACCCAAAGGCCCCAAAAGCCAAAAATTCATGTTCCTTGCGCGCAACACCTTGAAAGCAAGCAACACCCCCTC TAGATCCAACAGGCCAGTCCACCCGACTGACCCTCAAGCAGGAGAATTACACCATGCTGAGCTGGGACGAATTCGATAAAGAAGACGGCGAAGTAGTCGC CAAAGCGACCAACGCCGGTCACGCCAACGAAGCCAACATGGACCGCCTCGACAGCGCCGGTGGCCTGGCTGCACAGGAAGCCCGTGCGGTCACCGCCAAC GACTCCGCTGCCCTGATCCGCGCCAAGAAAGCGCTGGACGCACTGGACGTCGCTGAAGGCCTGGCCGAACTCGAAGGCGCCAGCGCCCGCGTCGCCGTTG
|
|
| Amino Acid Sequence |
>ribonucleotide-diphosphate reductase subunit alpha
MQTDTTRENSPTGAPQASQAQQDLSATAPGQLRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAASSRIHDTVARLTEQVSATFKRRMPSGGTIHIEE IQDQVELALMRAGEQKVARDYVIYRDSRAKERAVRAPEDQVQAHPSIRITLADGSFAPLDMGRLNTIVTEACEGLAEVDANLIQTETLKNLYDGVALKDV NTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFLGVADSATHHEMADLYAKALPAYVATGIKFELLNPVLAEFDLEKLGKAINHERDQQFTYLGLQ TLYDRYFIHKDGVRFELPQIFFMRVAMGLAIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGG LGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPW TLFSPSEVPDLHDLTGKAFQERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIA VCNLGSINLPNHIVNGKLDTDKLKRTIDVAVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADSSMEAVSYYAIQAS CDLADERGAYETFQGSLWSQGILPLDSQQILIEQRGQKYIDVDLKESLDWAPVRARVQKGIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSG EFTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGL KTTYYLRALAATSTEKSTVNTGKLNAVSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAIDEPDCEACQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|