Pseudomonas syringae pv. actinidiae ICMP 9617, A250_RS12165
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. actinidiae ICMP 9617 chromosome Chr, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCCGCTCAGTACGAAAGCTGGAGCCTGCCGCTGGCGGTGATCCTGATTGTACCGATGACCCTGCTGTCGGCCATTGCCGGGGTGATCATTGCCGGTAGCG ACAACAACATCTTCACCCAGATCGGCCTGATCGTACTGGTGGGGCTTGCGTGCAAGAACGCGATTCTGATCGTCGAGTTCGCCAAGGACAAACAGGCCGA GGGCATGAGCCCGCTGGATGCAGTGCTGGAAGCCTGCCGCCTGCGTCTGCGTCCGATCCTGATGACCTCGTTCGCCTTCATCATGGGCGTGGTGCCGCTG GTACTTTCCAGCGGTGCCGGTGCCGAGATGCGTCACGCGATGGGGGTCGCGGTGTTCTCCGGGATGCTCGGCGTCACCTTCTTCGGCCTGCTGCTGACGC CAGTGTTCTACGTGCTGATTCGTAACTACGTTGGACGTCAGGAGGCCCGCAAGGCCGCCAAGGCGCAAAAACTGCAAAACCTGCCTGCGGAGATGCATTG
|
|
| DNA Sequence for Gene |
>A250_RS12165
ATGAGCGCGTTCAAAGTCTTTGTCCCAAGCCTGCTGGTTCTGGCGCTGGCGGCCTGCGCCGTCGGCCCGGACTACAAGGCACCGGTCACGGCACCTGCGA CCCTGGCCTCGGCGGCCAAGGGCAACTATGACCGCAGCAAGGTCAACACCCTGTGGTGGCAGCAGTTCGACGACCCGACCCTCAACAAGCTGGTAGCCCA GTCACTGGACGGCAACCGTGATCTGCGCGTCGCATTTGCCCGCCTCAAGGCTGTACGGGCGATTCGCGATGACGTCGCCAACGACATCATGCCGGTGGTG ACCAGCCGGGCCAGCAGTGACCTCGGCAAAGGCCAGCAGCCAGGCGTCACCGAGCGCCGTGTCAACAGCGAGCGTTACGATCTGGGCCTGGACATGGCGT GGGAGCTGGACCTGTTCGGACGCATTCAGCGACAACTGGAGGCCAGCAACGCCGACCAGGAGGCTGCCGAAGCCAATCTGTATCAGTTGCAGGTCACGCT GATCGCCGAGGTGGTCGATGCCTATGGGCAGCTGCGCGGTGCGCAATTGCGTGAAGCCATCGCCCGGGACAACCTGACCAACCAGCAGAAGTCTCAGGGT ATAACCACTCAACTGCGCGATGCCGGTGTCGGCAACGAACTGGACGTAGTACGCGCCGACGCACGCCTTGCAGCGGTTGAAGCAACTGTTCCGCAATTGC AGGCAGAGCAGGCGCGCCAGCGCAATCGCATTGCAACATTGCTGGGCGAGCGACCAGACACGCTTAGCGTGGACCTGAGCCCTAGCAAATTGCCCGCGAT CGCCAAAGCGTTGCCTATCGGCGATGCGACGCAGGTGCTGCGCAATCGCCCTGACATACGTGCTGCCGAGCGCCAACTGGCTGCCTCGACTGCGCGTATC GGCGTGGCGACGGCCGACCTGTTTCCGCGCGTCAGCCTGAGCGGTTTTCTGGGCTACACCGCCGGACGTGGCTCGCAGATAGGTTCTTCTGCGGCCAGAG CCTGGTCGCTGGGGCCGAGCATCACCTGGGCAGCCTTCGATCTGGGCAGTGTGCGGGCGCAGATTCGCAGCGCCGATGCCGACGCCGAAGGCGCGCTGGC CAACTACGAGCAACAAGTGCTGCTGGCGCTTGAGGAATCGGAAAACGCGTTCAGCGATTACGACAAACGCCAGCAGCGACTGGTGGCACTGATGCGCCAG AGTGACGCGAGTCGCTCGGCAGCCCGACTCGCCTCGGTGCAATACCGTGAAGGCACCGCCGATTTTCTGGTGTTGCTGGATGCCGAGCGCGAGCGTCTGG CGGCCGAGGACTCTCAGGCCCAGGCACAAATCGAGCTGTATCGCGGCATAGTGGCAATCTACAAGGCGCTGGGCGGCGGCTGGCAGCCGCAAGCCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TACGCAAGTCCAATAAATGTAACGCCGTGTAAAACGCCCCTCGCCCCCAAAGGTGCGGGGCTTTTTTCTGCCAGCCGTTCAATGCCCGTAAGATTGCCGT TTGACAGCTGCCATCGACTCCCCGAAGCTGCAACCCGTCAAGCATTGGAAACCGATATGCCCAGACTGCCTTTCAAGGGGTTATCGCCTCAACCCACTAC TCGACGTCGCTGGCAGACAGGCGCAGCGGCCGCGGCGCTGCTGACGCTTGCGCTGGCGTTCTGGTGGTGGCGCATGCCAGTACAGACAACGCCAGTCAAG TTGAGCCATACCTACGCCCAGGCACTGGAGCAGGCACATGACGGCAAGCCCGGCGCAGCGCGCGTGCTGTATCAGCAACTGGCTCGCACCGATTTGTCTG ACGAGCAACGCATCACGCTGCTCGCCGAATTGAGCGATTATCCCAGCCCTCAAGCGCTCAAGCTGCTCGACGCGGGCCTTGGCAACGCTTCCGATCAGGT
|
|
| Amino Acid Sequence |
>RND transporter
MSAFKVFVPSLLVLALAACAVGPDYKAPVTAPATLASAAKGNYDRSKVNTLWWQQFDDPTLNKLVAQSLDGNRDLRVAFARLKAVRAIRDDVANDIMPVV TSRASSDLGKGQQPGVTERRVNSERYDLGLDMAWELDLFGRIQRQLEASNADQEAAEANLYQLQVTLIAEVVDAYGQLRGAQLREAIARDNLTNQQKSQG ITTQLRDAGVGNELDVVRADARLAAVEATVPQLQAEQARQRNRIATLLGERPDTLSVDLSPSKLPAIAKALPIGDATQVLRNRPDIRAAERQLAASTARI GVATADLFPRVSLSGFLGYTAGRGSQIGSSAARAWSLGPSITWAAFDLGSVRAQIRSADADAEGALANYEQQVLLALEESENAFSDYDKRQQRLVALMRQ SDASRSAARLASVQYREGTADFLVLLDAERERLAAEDSQAQAQIELYRGIVAIYKALGGGWQPQA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|