Pseudomonas syringae pv. actinidiae ICMP 9617, A250_RS15935 (ligD)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. actinidiae ICMP 9617 chromosome Chr, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTCGTGCTGCACACCCGCGAGCACTTGGCGGCGGTCATGCCGCTGGAGTCGGCACTGGTGATGGTGATCCTGCGCTGGCCCGCCGATGTGCGTGAGCTCG ACGCACTGGAGCTGACCGAGGCCGTAACCGATGCCAGGTTGACCAAGAGCGAACGGGACATGGCCAAGCGTCTGGTCAAGGACATGAGCGCAGACTGGCA GCCTGACCAGTACCACGACACGTTTCAGGAAAAGATCATGCAACTGGTCGAAACCAAAGCCGGTGAAGGCAAGATCGAGGATGTCGAGACTGATCCGGGC CAGGAGGAGCGCAAGAGCGCCGATGTCATTGACCTTACCGATCTGCTGCGCCGCAGCCTGGCGGGCAAGAGCAGCGCCAGTAAAGCACGCAAGCCTGCTG CCAGGGACAAGGCCGCAGACAAGCAAAGCCCTAAGCCGAAACGACCTGCCGCGCGCAAGAAAACCGGCAAAGCTTCTTGAGCCCTACGGAGAAACCGGCC
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| DNA Sequence for Gene |
>A250_RS15935
|ligD
ATGGCCAAGCCCGCCAGCGAATACACGCGCAAGCGCAACTTCGACGTCACCTCCGAGCCTGCAGAGAGCAAGCGTAAAGGCAAAGCGCGGTCCGGTGCAC TGAGCTTTGTGATTCAGAAGCACGATGCGCGCAACCTGCATTACGACTTTCGGCTGGAACTGGACGGTACGCTGAAGAGCTGGGCGGTGCCCAAAGGGCC CAGCCTGGACCCGAAGCAGAAGCGTCTGGCCGTGCATGTCGAAGATCACCCGCTGGACTACGCGGCTTTTGAAGGCAGCATTCCGAAAGGCCAGTACGGC GGAGGCGATGTGATCGTCTGGGACAGGGGCATCTGGCAACCCCATGGTGATCCACGCAAGACCTATGCGGACGGCAAACTCAAGTTCACCCTGATCGGCG AAAAGCTCAGCGGCGAGTGGGCGCTGGTACGTACCCGGCTCAAAGGCAGCGGCAGCAAAGAGCAATGGCTGCTGATCAAGGAAAAGGACGACATTGCGCG GTCTGCCGCCGAATACGACATCACCGAGGCGCAACCGCAAAGCGTGATCAGTGGTGCGCACGTCGGGGCAGGGCGTTCAGCGCCAGCAAAGCCCAAAGCC AAGGCCGTTGAAGCGAAGCCTGCGCGCAAGCCCGCGCCGAAAAAGGCGAACGTCGTTTTCCCGGACACGCTTGCGCCGCAACTGGCGACACTGGTCGATG CGCCGCCTGCGGGCGACTGGCTGTACGAGATCAAGTTTGACGGCTATCGCATGCTGACGCGTATCCAGAACGATGAGGTGCGCCTGTTCACCCGTAACGG CAACGACTGGACCGATCAGTTGCCCGAGCTGACCAAGGCGCTCAAGGGCCTGAAGTTGCAGGACAGTTGGTTCGACGGCGAAGTTGTGGTGCTCGACGAG CAAGGGCTGCCGGATTTTCAGGGGCTGCAGAATGCCTTTGATGCGGGGCACAGCAAAAACATTTTCTATTACCTGTTCGACATGCTGTTTCTGAGCGGCG AAGACCTGCGCGAAGTGCCGCTTGAGCAGCGTCGCGACGCTTTGAAACAAGTCCTCGGCAGCCAGCGCAGCCGCCTGCTGCGCTACTCGGATGCGTTTCA GGCCGGGCATAAGGACATCGTGGCCAGTGCTGCGGCGATGGGCCTGGAGGGCGTAATCGGCAAGCGCGCTGGCAGCGCGTACGTCGGCAAGCGCAATGCC GACTGGATCAAGCTCAAATGCCGGTTGCGCCAGGAATTCGTGATCGTCGGCTATACCGCGCCGCAAGGCAGCCGCTCGGCCTTCGGAGCGCTGTTGCTGG CGGTCAATGACGATGCTCAAGGGCTGGTGTATGCCGGACGGGTCGGCACCGGGTTTACCGAGGCGACGCTCAAACACGTGCACAAGCAGCTGAAACCGCT GCACCGCGAGGAATCGCCCTTGGCGAATAAACTGACCTCGGCGCAGGCGCGCGAGGTGCAGTGGGTCGAGCCGACGCTGGTTTGCGAAGCTGAATTTGCG CAGTGGACTCGCGAGGGCATCGTGCGTCAGGCAGCTTTTTTCGGCCTGCGCAGTGACAAGCCAGCTACCGATGTGGTGCGTGAAGAGGCTCAGCCAGCCA AGGCTGCGTCAGTCACTCCTGAGCCCTCCAGGCAGCCCGGCAAGAAAACTGCCCGAGGCAAGGTCGATGTGGCGGGCACTGGCATCAGTCATCCGCAGCG GGTGATCGACAGCAAGACCGGCACGAAGAAAATCGAGCTTGCGCAGTTTTACGAGTCGATTGCCGACTGGATTCTGCCGTTCCTGAACAAGCGGCCAGTG GCGTTGCTGCGCTGTCCGGAAGGCATCGACGGTGAGCAGTTTTTCCAGAAACACGCCGAGCACCTCGCGATACCGCATATCAGGCAACTGGATCGCGCAC TGGACCCCGGCCACGCCGCGCTGATGGAGATCGACTCTGTGCAGGCGCTGGTGGGCGCGGCGCAGATGGGCGCTATCGAGTTGCACACCTGGGGCACGAC CCGCGACAGGATCGAAACGCCGGATCATTTTGTGCTGGACCTTGATCCAGACCCGGCGCTGCCCTGGCGCAGCATGATCGAGGCCACGCAAATAGTCCTC GCCGTACTGGAGGAGCTAGGGCTTGAAGCTTTTCTCAAGACCAGTGGCGGCAAAGGCATGCACATTATTGTGCCGCTGGCGCGACAGGCCGAGTGGGACA CCGTGAAAGCCTTCGCCAAGGCCATCGCCGAGTTCATCAGCCGTCAGTTGCCGGAACGCTTCACTGCAACCATGGGACCGAAAAACCGGGTCGGAAAGAT TTTCATCGATTACCTGCGCAACAGTCGCGGCGGCAGCACAGTGACTGCCTATTCGGTACGCGCCCGGCCGGGTTTGCCGGTCTCGGTGCCGATTGCGCTG CACGAGTTGGCCGGTCTGACATCGTCGGCACAATGGGACATCACCAACCTTGAGCAACGCTTTAGCCAGCTCAAGGATGACCCATGGGCCGGTTACAGCA ACCGGCGCAAAATCACGCAAAAGATGTGGAAGCAACTGGGGGCTAAACGGCCTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AATCAGGTGGGTCATCTATTTCGCCGCCAACCTGCAAGGGAGGACGCCTACAGGTTGGCGGTCAGAACAAATATCAGAGAATCCGGTAGAGCAAGCGCTC GACCCTGACCCGGCTGACCCGCTTGAGGAACTTGCGCACCCCTTCGGGATAATTGGCCAGGGTGTCGAGCTCGTCGTACTGGTTGACGCGTTGTGTGTTG CGCATCAATTGGGCGATTTCCGCTTCACGCGGGTCGGTCCACTGACCCTGCGGATCATCAATCAGCAAGCCGTTTTCCAGGTCGAGGTTGAACGCACGAG GGTTCAGGTTGTTGCCGGTCAGTAACGTATAACGCTGATCGACCCAGATGCCCTTGAGATGGAAGGTGTTGTCGCCGTGCTTCCACAAGTGCACGTTCAG GCGATGCTGGGCGATGGCCTTCTGGTGCTTGTGGGCAAAGCGTCGCAGGCTGATTTCGTACAGATAGGGCAGGGCCGAAATTACTTTGAACGGCTCGTCC
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| Amino Acid Sequence |
>ATP-dependent DNA ligase
MAKPASEYTRKRNFDVTSEPAESKRKGKARSGALSFVIQKHDARNLHYDFRLELDGTLKSWAVPKGPSLDPKQKRLAVHVEDHPLDYAAFEGSIPKGQYG GGDVIVWDRGIWQPHGDPRKTYADGKLKFTLIGEKLSGEWALVRTRLKGSGSKEQWLLIKEKDDIARSAAEYDITEAQPQSVISGAHVGAGRSAPAKPKA KAVEAKPARKPAPKKANVVFPDTLAPQLATLVDAPPAGDWLYEIKFDGYRMLTRIQNDEVRLFTRNGNDWTDQLPELTKALKGLKLQDSWFDGEVVVLDE QGLPDFQGLQNAFDAGHSKNIFYYLFDMLFLSGEDLREVPLEQRRDALKQVLGSQRSRLLRYSDAFQAGHKDIVASAAAMGLEGVIGKRAGSAYVGKRNA DWIKLKCRLRQEFVIVGYTAPQGSRSAFGALLLAVNDDAQGLVYAGRVGTGFTEATLKHVHKQLKPLHREESPLANKLTSAQAREVQWVEPTLVCEAEFA QWTREGIVRQAAFFGLRSDKPATDVVREEAQPAKAASVTPEPSRQPGKKTARGKVDVAGTGISHPQRVIDSKTGTKKIELAQFYESIADWILPFLNKRPV ALLRCPEGIDGEQFFQKHAEHLAIPHIRQLDRALDPGHAALMEIDSVQALVGAAQMGAIELHTWGTTRDRIETPDHFVLDLDPDPALPWRSMIEATQIVL AVLEELGLEAFLKTSGGKGMHIIVPLARQAEWDTVKAFAKAIAEFISRQLPERFTATMGPKNRVGKIFIDYLRNSRGGSTVTAYSVRARPGLPVSVPIAL HELAGLTSSAQWDITNLEQRFSQLKDDPWAGYSNRRKITQKMWKQLGAKRP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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