Pseudomonas syringae pv. actinidiae ICMP 9617, A250_RS21880
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. actinidiae ICMP 9617 chromosome Chr, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCCGGGTGATGAGCACGCCTTCCCAACTGGGCATCAACGCGCTGGCGATGGTGAAAAGCGACGCGCAGAACAGCGCCATGACCATCACCGACTTGCGCCC GAGCCGGTCGGATATCGGCCCGGTAATCAGCAGGCCGATGGCGAGCATCGCTGTGGCAACTGACAGAATCAGGCTGCTCTGGGCGGCCGAGAGCGAGAAC TCGCTGGACAGCGTCGGCATCATCGGCTGGACGCAATACAGCAGGGTGAACGTCGAGAACCCACCCGCAAACAGTGCCAGCGCGGTGCGTTTGAACAGCG GCGTGTTCTTTTCGATGTAGCTGTCGCCAGACGGTTTAGCGGGCGTATTCAGGTCTGTGGTGGGCGGGGCGACGGCAGGATTCAAAGGAGACCTCGGAGC ACGATTGGGCAGGCGATGAAAAAATCATATAGCCCGCCAATCATTCCATCCAATATATTGTTCGACCTGTTTGATAGGTAAAACGTCTTAGTGGAGGCGC
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| DNA Sequence for Gene |
>A250_RS21880
ATGGAATTGCGCCATCTGCGTTACTTCATCGCTGTTGCCGAAGAGCTGCATTTCGGCCGTGCAGCACTGGCGCTGGGCATTTCTCAGCCGCCACTCAGCC AGCAGATTCAGGCGCTGGAGCAGGAACTGGGTACGCGTTTGTTTGAGCGCACCAATCGTCGCGTTGAATTGAGTGAGTCCGGGCGGCTGTTTCTTGATGA GGCGCGTCTGGTATTGGCCCAGGTTGATAAAGCCACTGATGTGGCCCGGCGCGCGCAACTGGGTGAAATCGGTGAACTGAAGATCGGCTTTACATCGTCC GCGCCGTTCACTTCCAGTATTCCGCAGGCGATCTTTGCGTTTCGTCAGGCTTACCCTGACGTGCACCTGACCCTGACCGAAATCACCAGCCAGGAAGTGG CCGCAGGGCTTGAAGACAAGAGCATACAGGTCGGCATCATGCGCCCGCTGACGCTGCCTGACTCACTGGTGGTGTTTGAATTGCTGAACGAGCCGCTGGT AGCCATCATGCGTGCCGACCATCCGCTGGCGGCGGGCAGCGAGGACGGAATCTATATGGCCGCGCTGGCCGCCGAGCCGTTTGTGTTCTTTCCACGCACC TATGGCAGTGGCATCTACGCACAGGTCCTGAGCCTGGCACGCGCCGCAGGCTTCAGCCCGTTGATCACTCAGGAAGCGGGGGAAGTAATGACCATCATCG GCCTGGTCGCGGCCGGCTTGGGCGTGACGGTGTTGCCTGCATCCTACCGCCGGATGCGCATCGACAGCGTGGTCTACCGCAACGTCCTCGACCCCGGCGC AACCAGCGCGGTGTGGCTGGTGCAGCGCAAGGACGAACAGTCACCGATGGCCAAGGCATTTACCGAACTCTTGAGGCGTAACGTCGCACGGTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTGAGGTTATCGTTCTGTACGCTCCAGTGAGCACACATTGCCCGCGTGGGAGCGAGCTTGCTCGCGAAAGCAGGCTGGCTGATCAGTAAATATGTAGCGG CTACACCTGCCTCTTCGTGAGCAAGCTCACCCACTAGAGCGTCGCACGATAGTTGAGATTATCGTGCCTCACCCCCAACGCTTGAAGATCAGCGACGTAT TCACCCCGCCAAAGGCAAAGTTGTTATTCATCACGTATTCATTGCTCATCTGCCGGGGTTCGCCGACGATGTAGTCAAGTTCGCCGCAATTTTTGTCCAC GTCGACCAGGTTCAGCGTGTGGATGTAGCGATCACTGTTGAGCATTTCGATGCTGAACCACGATTCCAGCGCACCGCACGCGCCCAGTGTGTGGCCGAGG AAACTTTTTTGGGAGCTGAGCGGCATGCGTGGGCCGAACAGGCTGCTGGTGGCCAGGGTTTCGGCAATGTCGCCTTGTTCCGTCGCCGTGCCGTGGCCGT
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| Amino Acid Sequence |
>LysR family transcripitonal regulator
MELRHLRYFIAVAEELHFGRAALALGISQPPLSQQIQALEQELGTRLFERTNRRVELSESGRLFLDEARLVLAQVDKATDVARRAQLGEIGELKIGFTSS APFTSSIPQAIFAFRQAYPDVHLTLTEITSQEVAAGLEDKSIQVGIMRPLTLPDSLVVFELLNEPLVAIMRADHPLAAGSEDGIYMAALAAEPFVFFPRT YGSGIYAQVLSLARAAGFSPLITQEAGEVMTIIGLVAAGLGVTVLPASYRRMRIDSVVYRNVLDPGATSAVWLVQRKDEQSPMAKAFTELLRRNVAR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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