Pseudomonas syringae pv. actinidiae ICMP 9617, A250_RS23020
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. actinidiae ICMP 9617 chromosome Chr, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTCGATACGATCGGCGATTTTCAGCAGCACCAACGAGCGCGCCTGCACCGAAGTCGAGCCCCAGGCTGCGGCGGCTGCGTGGGCAGCGTCGAGTGCCTTG TCGATGTCTTCGGCGGTGGAGCGCGGGAATTCGGCGATGGGCTTGCCGTTGACGGGCGAGGTGTTGGTGAAATACTGACCTTTGACGGGCGCGACGAACT CGCCGCCAATGTAGTTACCGTAGCGTTCCTTGAAGTTGACGATAGCGCCTTCGGTACCGGGATGAGCGTAACGCATGGTATGTCTCCTGGTTCTTGTTGT GAGGGAGTCTGTGTCGATTCTGCATTCGGGTAGTGGGCAGGAAGCATTCAAGAGTAGGCTATTTGCAGCCGGCCGTGATCAGGACTTTAGGCTTATCCGC ACGTTATTGAAACACCTGCGCGGGCGCTGCGACGGACAAACTCAGGGTGCCATTTGACCGCCCCTACGTTAACCTGCGTGGATGTTCTGAGAGGTTGGTC
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| DNA Sequence for Gene |
>A250_RS23020
ATGCACATTCATATCCTTGGTATCTGCGGCACGTTCATGGGTTCGCTGGCGGTGCTCGCCAAAGAGTTGGGGCATCGGGTCACCGGCTCCGACGCCAACG TCTACCCGCCGATGAGTACCCAGCTTCAGGCCCAGGGTATCGAGCTGACTCAGGGCTACGACCCTGTGCAACTGGTTCCGGCGCCGGATCTGGTGGTGGT CGGCAACGCACTGTCGCGTGGCAACCCGGCGGTTGAATATGTCCTGAATAAAGGTTTGCCGTATGTGTCTGGCCCGCAATGGCTGGCAGACCACGTGTTG CAAGGTCGCTGGGTACTGGCGGTAGCCGGCACACACGGCAAGACCACCACCAGCAGCATGCTGGCCTGGGTGTTGGAGCACGCGGGCATGAGCCCTGGCT TTCTGATTGGCGGTATCCCGCAGAATTTCGCAGTGTCGGCGCGTCTGGGTGAAACCCCGTTCTTCGTGGTGGAAGCTGACGAATACGACAGTGCCTTCTT CGACAAGCGCTCCAAGTTCGTTCATTACCGCCCACGTACTGCGATCCTCAACAACCTTGAGTTTGATCACGCCGACATTTTTCCTGATCTGCCCGCCATC GAGCGTCAGTTTCACCATCTGGTGCGCACCATTCCGAGCGAAGGCCTGGTGATTCATCCGACCACCGAGCCTGCGCTGTCGCGCGTCATCAAAATGGGCT GCTGGACGCCGGTGCAAACCACGGGCGAGGGCGGTCAGTGGCAGGCGCGGTTGTTGAGTGAAGACGGATCGCGTTTTGAAGTGCTGTTCGAAGGCGAGCT GCAGGGCGCGGTCGAGTGGGACATGACTGGCCTGCACAACGTCGCCAATGCGCTGGCGACCCTCGCTGCAGCCCGTCACGTCGGTGTTGTTCCGCTGCTG GGCGTGCAGGCACTGAGCGCGTTCAAAAGCGTCAAGCGCCGTATGGAAAAGGTCGCCGAGGTGCGCGGCATCACTATTTATGACGACTTCGCTCATCACC CGACCGCGATTGCCACCACGCTGGATGGCCTGCGCAAAAAGGTCGGCGATGCGCCGATCATTGCCGTGGTCGAACCGCGTTCCAACTCCATGAAGCTGGG CGCGCACCGCGACGGTCTGCCGGAAAGCGTACAGCAAGCCGATCAGGTGGTCTGGTATGCGCCCCCCAATCTGGGCTGGGACATGGCGGCAACAGTAGCC GGAGGCACTGTGCCTGCGTTGGTCTGTGATTCTCTGGAGGCAATCATCGCCCAGGTCAAAAGCCAGGCGCAGCCCGGTACGCACGTTGTCATCATGAGTA ACGGCGGTTTTGGCGGCCTGCATGGCAAGCTGGCGGAGGCGTTGCAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGGCCCGGAGCGCGTTACCGTTGCGATGACCGGTGCGTCAGGTGCGCAATATGGCCTGCGCTTGCTGGATTGTCTGGTGCGTGAAGACCGGGAAGTGCA CTTCCTTATCTCCAAGGCCGCGCAATTGGTGATGGCCACCGAGACCGACGTGCGCCTGCCGCCCAAGGCGATGATGATGCAGGCCTTCCTGACGGAATAC ACCGGCGCATCGGCCGGGCAGATTCGGGTGTATGGCCGCGACGACTGGATGTCGCCGGTGGCCTCGGGCTCCGGTGCGCCCAGCGCGATGGTGGTGGTGC CGTGTTCCACCGGTTCGTTGTCGGCGATTGCGACCGGTGCCTGTAACAATCTGATCGAGCGCGCCGCCGACGTCACCTTGAAAGAGCGTCGGCAGTTGAT CCTGGTGCCCCGCGAGGCACCGTATTCCAGCATTCATCTGGAGCACATGCTCAAGCTGTCGAACATGGGCGCGGTGATTCTGCCAGCGTCTCCTGGCTTT
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| Amino Acid Sequence |
>UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase
MHIHILGICGTFMGSLAVLAKELGHRVTGSDANVYPPMSTQLQAQGIELTQGYDPVQLVPAPDLVVVGNALSRGNPAVEYVLNKGLPYVSGPQWLADHVL QGRWVLAVAGTHGKTTTSSMLAWVLEHAGMSPGFLIGGIPQNFAVSARLGETPFFVVEADEYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLPAI ERQFHHLVRTIPSEGLVIHPTTEPALSRVIKMGCWTPVQTTGEGGQWQARLLSEDGSRFEVLFEGELQGAVEWDMTGLHNVANALATLAAARHVGVVPLL GVQALSAFKSVKRRMEKVAEVRGITIYDDFAHHPTAIATTLDGLRKKVGDAPIIAVVEPRSNSMKLGAHRDGLPESVQQADQVVWYAPPNLGWDMAATVA GGTVPALVCDSLEAIIAQVKSQAQPGTHVVIMSNGGFGGLHGKLAEALQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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