Strain | Pseudomonas syringae pv. actinidiae ICMP 9617 chromosome Chr, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
CCCAGCAACTTCCCGCGGCGCAACCGGATCATCAGCGGCTTGTCCCTCGGCGTACTGGTGGTCGAGGCCAGTGTTGCCAGCGGCTCGTTGATTACCGCAC GCCTGGCCGCCGAGCAAGGGCGAGAGGTTTATGCGATACCCGGCTCTATCCACCATCCGGGCGCCAAAGGGTGTCACCAGTTGATAAGGGACGGCGCGAC GCTGGTCGAGACCGTCGACCATATTCTGGAAGGCTTGCAGCACTGGAAGCGCATTGCACCCGGCGCCGACTCTTCAAATACCGAACCTGCTCCCTGCGAC CATCCACTATTGGCTTTGCTCCACGCCGCGCCGCACACCAGCGAGGGGCTGTCGGTCTCCAGCGGCTGGCCATTGCCGAAAGTATTGGCTGGCCTGACCG AGCTGGAACTGGACGGGCGCATAAGCTGTGAAGCAGGACGATGGTTCGCCAGCGCGCCCTGAGGTTAAACTGCCGCCAGGATTTATCGGAGAAACAGACA
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DNA Sequence for Gene |
>A250_RS24400
ATGGTCAGCAGTTGGCGTGTGCAACAAGCCGCTCAGAATATTCGAGCCGGTGCTGTGATTGCCTACCCGACCGAAGCAGTCTGGGGGCTGGGGTGCGATC CATGGGATGAAGAGGCGGTCTATCGCCTGCTGGCGATCAAATCGCGGCCAGTGGAAAAAGGCCTGATCCTGATCGCGGACAACATTCGCCAGTTCGACTT TCTGTTCGAGGACTTCCCCGAGTTGTGGCTCGACCGCATGGCCAGCACCTGGCCAGGGCCCAATACCTGGCTGGTGCCGCACCAGAACCTGTTGCCCGAG TGGATCACTGGTATTCACGAAACCGTGGCGCTGCGTGTCACCGATCACCCGACTGTACGCGAACTGTGCGCGCTGGTCGGCCCGCTGATCTCCACATCGG CCAACCCGGCGGGTCGCCCGGCCGCGCGTTCACGACTGCGGGTTGAACAGTACTTCCGTGGCCAGATCGACGGCGTGCTCGGCGGCAGCCTGGGCGGCCG CCGAAACCCCAGCGTGATACGTGATATCGCCACCGGGCAGGTGATGCGCGCCGGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
CGCTCGCTCAGGGAATCAGGATGGTCGAGCCAGTGGTGCGCCGCGCCGAGAGTTCGATCTGCGCCTGGGCGGCGTCCTTGAGGGCGTACTGCTGAATGCC ATCGACCTTGAGTTTGCCGCTGGCCAGCATGTTGAACAGCTCATCGGCCATCGTTTGCAGGTTTTGCGCGTTGTTGGCGTAGCTGCCCAACGTAGGGCGG GTGACATACACCGAACCCTTCTGCGCCAGAATGCCCAGGTTTACGCCTGACACCGGCCCCGATGCATTGCCGAAACTCACCACCAGCCCACGCGGTGCCA CGCTGTCGAGTGAAGTCAGCCAGGTGTCCTGCCCCACGCCGTCATAGACCACCGGGCATTTCTTGCCGTCGGTCAGCTCCAGCACACGCCTGGCGACGTC TTCATGGCTGTAGTCGATGGTTTCCCAGGCGCCGAGTGCCTTGGCGTGCGCGGCTTTCTCCGGCGAACTGACCGTACCGATCAGCTTGGCACCCAGTGCC
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Amino Acid Sequence |
>tRNA threonylcarbamoyladenosine biosynthesis protein RimN
MVSSWRVQQAAQNIRAGAVIAYPTEAVWGLGCDPWDEEAVYRLLAIKSRPVEKGLILIADNIRQFDFLFEDFPELWLDRMASTWPGPNTWLVPHQNLLPE WITGIHETVALRVTDHPTVRELCALVGPLISTSANPAGRPAARSRLRVEQYFRGQIDGVLGGSLGGRRNPSVIRDIATGQVMRAG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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