Pseudomonas syringae pv. actinidiae ICMP 9617, A250_RS25115

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas syringae pv. actinidiae ICMP 9617 chromosome Chr, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GAGGGCGACTGGCGTCCGCCAGCCAATAGCGCGCATGAACGTGTAGAAACGGACCGTGCGACGCTTCGCTTGTGCGCGAGCGGTCGGATGACTCATTCAC GGTTCATCGGAATGAATGTAGGAGCGGACTTGTCCGCGAATGCTGCACTGCAGGCGATAAATATTCTACGGATGTAAAGCCCTCTTCGCGGACAAGTCCG CACGGCCTTCGGCCAGAATCCAGAGCGGACCGGGTGCTGCTTCGCTTGTGCGCGAGCGGTCGGATGACTCATTCACGGTCCATCGGAATGAATGTAGGAG CGGACTTGTCCGCGAATGCTGCACTGCAGGCGATAAATATTCTGCGGATGTAAAGCCTCTTCGCGGACAAGTCCGGTCCCACGGCCTTCGGCCAGAATCA GTCGTCAACCTCCCGACAGACGCCAATTGCCACTCCCCCTCCGCTCTGCCACAATCGCGAATGATTCTCTTTAGTTCTATCTTTCTCATCGAGGCCATTC
DNA Sequence for Gene
>A250_RS25115
GTGTCGTCAGTCCCAAGCGCTCATAGTCAGATCGTTGGTGCGTTGTATCGCGATCATCGCGGCTGGTTGCTGGCATGGCTGCGCCGCAATGTCGCCTGCC CACAACGGGCTCAGGACCTTAGCCAGGACACGTTTGTACGTCTGCTGGGGCGCGATGAGCTGCAATTGCCTCGCGAGCCGCGTGCGTTTCTGGCGACCAT CGCCAAAGGGCTGATGTTTGATTACTTCCGGCGGGCCGCGCTTGAGCAGGCTTATCTTGGGGAATTGCTGCAGATCCCCGAAGCCGAGCAGCCGTCGCCC GAAGAACAACTGCTGATTCTGGAAGACCTCAAGGCTATCGACCGCATGCTGGGCACGCTGTCCAGCAAGGCGCGGGCTGCGTTTCTCTATAACCGCCTCG ACGGGCTGAGCCACGGCGAAATTGCCGAGCGTCTGGGTGTCTCGGTATCACGCGTCAGGCAGTACCTCGCTCAAGCCGTGCGTCAGTGCTATGTCGCGTT GTACGGCGAGCCGACATGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
ACACACGACCGGTATCTGCCCGTGTGCTCGACGCCGCAATCGAGTGGCAACTGAACATGGATGGCAACAGCGGCAGCGAAGCCGACCGCGCCGAACTGGC CCGCTGGCTGGCCGCCGACGAAGAACATGCCAGGGCCTGGAGCCAGTTGGGCATGGTCAACCAGCGCTTCGTCCTGCCAGCCGGCCCGGCACGCAAGGCC TTGCAGCAATCGCCGGTTTCGCTGCGGCGCAGCGTGCGCAAGCTTGGCGGTGGTCTGGCGGGAGTGTTCATGGCTTGCGGCCTGGCGCTGTTTGTCGGGG ACCGTTACTTGCCGATGGATTACTGGCTGGCCGACCAGCGCACCGCAACCGGCGAACAGCGCGAAGTGCGTCTGGCTGACAACACCCTGGTCCGTCTCAA CACCCACAGCGCAATCGATGTGCGCTTCGACGCGCAGCAACGCCGGATCATTCTGCAGGACGGCGAAATACTGGTGCAGACCGGTAGTCACGATGATCCC
Amino Acid Sequence
>RNA polymerase sigma factor
MSSVPSAHSQIVGALYRDHRGWLLAWLRRNVACPQRAQDLSQDTFVRLLGRDELQLPREPRAFLATIAKGLMFDYFRRAALEQAYLGELLQIPEAEQPSP EEQLLILEDLKAIDRMLGTLSSKARAAFLYNRLDGLSHGEIAERLGVSVSRVRQYLAQAVRQCYVALYGEPT
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site