Pseudomonas syringae UB0390, IV03_RS00545
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae strain UB0390 contig82.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGGCTCGCCCTTGTAGGAAAAGCGCGTGGTGCCATCCGGCATCAGGCCTTTACCCTGAGTGGCACGAATCGCCTGGCACAGGTTGGTCTTGCCCGAGCGG CAGAACTTGCACTGACGGCATTCCGGGGTGTACAGCGGAATCACGTGGTCGCCGACCACCACCGAGGTCACCCCCTCACCTACCGCCTCTACAATCGCAC CGCCTTCGTGGCCGAGGATCGACGGGAAAATCCCTTCTGGGTCAGCCCCGGACAGTGTGTAGGCATCGGTGTGGCAGACGCCGGAGGCCACTACTCTGAG CAGCACTTCTCCCGCCTTGGGCATGGCGACATCGACTTCAACGATCTCCAATGGCTTTTTGGCTTCAAAAGCGACAGCAGCGCGCGACTTGATCATCAAT CTTCTCCGACGGGTAAAAACAAGGATTGCAGTGTAGTACAGTGCCAATTGACGAGTAATGCGGCTAAAAGCAAAACATTAATGCTGTGCAGGGATAATCG
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| DNA Sequence for Gene |
>IV03_RS00545
ATGTACACCAATCGCTGGGAAGGTCTGGATGAGTTCGTTGCCGTCGCGGAATGCGGGCAGTTCACGGCGGCCGCTCAGCGGCTCGGGGTTTCCTCGTCGC ACGTCAGTCGTCAGATCGTGCGCCTTGAAGAACGCCTGCAGACCCGTCTGCTATACCGCAGCACGCGCAAGGTCGCGCTCACCGAAGCCGGCCAGACCTT TCTGCATCACTGCCAGCGCCTGCAAGATGGCCGCGAAGAAGCACTGCGCGCCGTGGGCGATCTGGCCAGCGAACCGAAGGGGTTGTTGCGCATGACCTGC GCCGTGGCCTATGGGGAGCGCTTCATTACGCCGCTGGTCACACGTTTCATGGATGTGTACCCGCATCTGCGGGTCGATATCGAGTTGAGCAACGACACGC TGGACCTGGTTCATGAAGGCATGGACCTGGCGATTCGTCTGGGCCGGTTACAGGATTCGCGTCTGGTCGCAACCCGCCTCGCGCCACGGCAGATGTACCT GTGCGCTTCGCCGTCCTACATCGAGCGCTACGGTAGACCACACAGCCTTTCGGAACTGAATCGCCATAACTGCCTGATCGGAGGCAGCGACACCTGGCAG CTCCAGCAGAACGGACGTGAGTTTTCCCAGCGTGTGCAGGGCAATTGGCGCTGTAACAGCGGCCAGGCCGTGCTGGATGCCGCGTTGCACGGAGTCGGTT TGTGTCAATTGCCGGATTACTACGTGCAGAAACATCTCAACGACGGCACGCTGGTTTCATTGCTGGAGGCGCATCAACCGCCCAACACCGCCGTGTGGGC GCTCTATCCGCAGCAAAGGCACCTGTCACCCAAGGTGCGCAAGCTGGTGGATTATCTTAAGGAAGGGCTGGCGATGAGGGATGAATACCGTCAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CAGCGCTTAACGACCGAACTCGCTGCGGCGCTGGCGCAGCCACTCCAGGTCTTCGGGACGCGTAACCTTGATGTTGTCCGAGCGTCCCTCGATCAGACGT GGCGATTGACCCGCCCACTCGATGGCCGATGCCTCATCGGTGATACTGACGTTAGACACCAGGCTGTCCGCCAGGGCGCGATGCAGGGCCCCGAGACGAA ACATCTGCGGCGTGAACGCTTGCCAGATCAGGCTGCGATCCACTGTTTCCAGCACGCGACCACTGCTGTCGGCACGCTTGAGCGTATCGCGGGCCGGCAC GGCCAGCAGGCCGCCGACAGGATCATCGGCCAGTTCGCCAAGCAGATTATCCAGATCAGTGCGCGCCAGGTTCGGACGCGCAGCGTCATGAACCAGCACC CAGTCATTGTCACTGGCGCCCTGCGCATGCAGGTGCAGAAGCGCATTGAGCACCGAGCCTGAGCGCTCGCTGCCGCCGTCCACGCGCTGAATACGAGTGT
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| Amino Acid Sequence |
>LysR family transcriptional regulator
MYTNRWEGLDEFVAVAECGQFTAAAQRLGVSSSHVSRQIVRLEERLQTRLLYRSTRKVALTEAGQTFLHHCQRLQDGREEALRAVGDLASEPKGLLRMTC AVAYGERFITPLVTRFMDVYPHLRVDIELSNDTLDLVHEGMDLAIRLGRLQDSRLVATRLAPRQMYLCASPSYIERYGRPHSLSELNRHNCLIGGSDTWQ LQQNGREFSQRVQGNWRCNSGQAVLDAALHGVGLCQLPDYYVQKHLNDGTLVSLLEAHQPPNTAVWALYPQQRHLSPKVRKLVDYLKEGLAMRDEYRQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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