Pseudomonas syringae UB0390, IV03_RS01710
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Cellular Component | GO:0019867 | outer membrane |
Inferred from Sequence Model
Term mapped from: InterPro:SM00965
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
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| Molecular Function | GO:0022857 | transmembrane transporter activity |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01786
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Biological Process | GO:0055085 | transmembrane transport |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01786
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Biological Process | GO:0015886 | heme transport |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01785
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Molecular Function | GO:0015232 | heme transmembrane transporter activity |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01785
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Gene3D | G3DSA:2.40.170.20 | - | IPR036942 | TonB-dependent receptor-like, beta-barrel domain superfamily | 272 | 858 | 1.3E-125 |
| Gene3D | G3DSA:2.170.130.10 | - | IPR037066 | TonB-dependent receptor, plug domain superfamily | 148 | 271 | 2.0E-34 |
| Pfam | PF07715 | TonB-dependent Receptor Plug Domain | IPR012910 | TonB-dependent receptor, plug domain | 147 | 256 | 7.2E-27 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 313 | 336 | - |
| NCBIfam | TIGR01785 | JCVI: TonB-dependent heme/hemoglobin receptor family protein | IPR011276 | TonB-dependent haem/haemoglobin receptor | 132 | 855 | 1.7E-127 |
| SMART | SM00965 | STN_2 | IPR011662 | Secretin/TonB, short N-terminal domain | 72 | 123 | 3.3E-8 |
| SUPERFAMILY | SSF56935 | Porins | - | - | 133 | 855 | 1.62E-119 |
| PANTHER | PTHR30069 | TONB-DEPENDENT OUTER MEMBRANE RECEPTOR | IPR039426 | TonB-dependent receptor-like | 104 | 857 | 9.3E-112 |
| NCBIfam | TIGR01786 | JCVI: TonB-dependent hemoglobin/transferrin/lactoferrin family receptor | IPR010949 | TonB-dependent haemoglobin/transferrin/lactoferrin receptor | 133 | 856 | 0.0 |
| Gene3D | G3DSA:3.55.50.30 | - | - | - | 44 | 144 | 3.6E-22 |
| Pfam | PF00593 | TonB dependent receptor | IPR000531 | TonB-dependent receptor-like, beta-barrel | 348 | 856 | 5.7E-63 |
| CDD | cd01347 | ligand_gated_channel | - | - | 152 | 858 | 2.81163E-97 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.