Pseudomonas syringae UB0390, IV03_RS02465

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas syringae strain UB0390 contig76.1, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
TCCGCTCCACGATATGTCCAAGCTGTCCGATGCACTGGCCATGGAGGCAGCGCCTGCGGCCCACCAACTGGCGCCGCATGCGCCGGTGGTCAAGGCACTG GACGGCAAACTGGTGCGTTTACCGGGCTACATCGTGCCGCTCGAGGTCAGTGAGGAAGGCCGGGTGACGGAGTTTTTGCTGGTGCCGTATTTCGGCGCCT GCATCCATGTGCCGCCGCCACCGGCGAACCAGATCGTGCATGTCACGAGCGAGCTGGGTGTGAAGGTCGATGAGCTGTATCAGCCGTACTGGATCGAAGG ACCGATGCAGGCCAAGTCGTCTTCCAGCGAACTGGCAGAAGCGGGTTATCAGATGCAGGCAGACAAGATTCTTGTCTACGAGTTGCCGGATTCATAAGGA TCACGAGGTTCCCAGCGATTTCATTGAGCTGAGTCAAAGTCGCCGCTCGACAGCGCTTTAACATTACGCCCATAAATTTTGACTGATCTCTGGAGCCTCC
DNA Sequence for Gene
>IV03_RS02465
ATGCACAAGCATCTGCTACGCGCGTCCCTTGTCGCGCTTGCCCTCACCGCCCCGGTCGCGGCACACGCCTACCAGCCTGGCGACTTCATCGTTCGCGCCG GTGTCGCACACGTCCAGCCTAACGAAGACAGCGGCGAAGTGCGCCTTGACGGTGCCAAGGTTTCCGGCACCAAAGCGACTGTCGACGGCGAAAACCAGTT GGGCCTGACCTTCGCCTACATGCTGACCCAGCACGTCGGCATCGAGCTGCTGGCCGCCACACCGTTCAGCCACACCGTATCGGTCAAAGGCCTCGGGCCT GGCCTGGATGGCAAGCTGGCCGATATCAAACAACTGCCGCCGACGCTGTCGTTGCAGTACTACCCGATGGAGCCGTCATCGAAATTCCAGCCGTATGCCG GCGTGGGCATCAACTACACCACCTTCTTCGATACCGACCTGACCGGCAACCGCAAGGATCAGGGGTTCAGCAACCTCAAGCTCAAGGACTCGGTCGGCCT GGCCGCACAGCTGGGGATGGACTACATGATCACCGACAACGTGCTGCTCAACGCCTCGGTCTGGTACGTCGACATCGACACCAAAGCAACCGTGGACGGC CCATCAGCCCTGGCCGTCGGCAAGACCAAGGTCGACGTGGACATCGACCCGTGGGTGTACATGGTGGGCGTGGGTTACAAGTTCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
CCTGAATGCCTCAACCGCCGCAAACACAAAGGCACCCTCATCGGGTGCCTTTGTGTTTTGTAGACCTGATGATCTCGTGCCGATTCCATGACGAAGTCAT GCCGCGTTTTTTCAGGAGCGGGCTTGTCCACGAAGGCGATTACATTCGATGCAATTCTGTGTCTGCAACATCGTCTTCGCGAACAAGTTCGCTCCTACAG GTGCTCACAGGCTTTTGTAGGAGCGAACTTGTTCGCGAATAGGCAGTTACATTCGATGCGAGGCTCACTGCCCCATCAACAACTCAAGCCCGCGCACCAG TGGCGTTGGCTCATCGATGGTGAAGTGTTCCAGCAGGCGCTGGTTGCTGGCACGGGAGTGTTTGATGTCGCCCGAGCGGGGTGCCTGATAGCTGACGTCC GGCTGCTTGCCGACGACCTGCGAAAGCGCGGCCAGCAATTCGTTGAGCGACGTGGTCTTGTTCAGGCCGACGTTGATTGCGCTTTCGATGGCGCCTTCCC
Amino Acid Sequence
>outer membrane protein W
MHKHLLRASLVALALTAPVAAHAYQPGDFIVRAGVAHVQPNEDSGEVRLDGAKVSGTKATVDGENQLGLTFAYMLTQHVGIELLAATPFSHTVSVKGLGP GLDGKLADIKQLPPTLSLQYYPMEPSSKFQPYAGVGINYTTFFDTDLTGNRKDQGFSNLKLKDSVGLAAQLGMDYMITDNVLLNASVWYVDIDTKATVDG PSALAVGKTKVDVDIDPWVYMVGVGYKF
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site