Strain | Pseudomonas syringae strain UB0390 contig55.1, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
CGGTCCTGACCTGTCTCTGGGTGAGTACTCGGACGTGGGTAGCATCATCGAAGCGTTCGCTTCCGAGCACGCGATGGTCAAGGTCGGTACCGTTATCGAT CCGGACATGCGTGACGAGTTGCACGTTACTGTGGTTGCCACCGGCCTGGGTGCGAAAATCGAGAAACCTGTCAAGGTCATCGACAACACGCTGCAGACCA CCCAGCAGGCTCCTGCGCAGCAGGCGTCCCGTCAGGAAGCACCGTCGGTCAACTACCGTGACCTGGATCGTCCTACCGTGATGCGCAATCAGGCACACGC AGGCGCTACAGCAGCGGCGAAGATGAATCCCAACGATGATCTCGACTACCTGGACATCCCGGCTTTCCTGCGTCGTCAGGCCGATTGATGAAATGTATCA GGGGTATTAGGGTGATTGGTGTTCAGCAAAGGCATGGTCTGCTATCATCGCCAGCCTTTGTTGATACCAGTTCGCAACTTGCGCTGAAGCGGCCCATGCC
|
|
DNA Sequence for Gene |
>IV03_RS04650
ATGATTAAACAACGCACCCTGAAAAATATTATCCGTGCCACAGGTGTAGGCCTGCACTCCGGGGAGAAGGTTTACCTGACCCTCAAGCCCGCACCTGTGA ATACCGGCATTGTGTTTTGCCGAGCTGACCTTGATCCGGTCGTGCAGATCCCTGCGCGTGCGGAAAACGTCGGTGACACCACTCTGTCGACCACTCTGGT CAATGGTGATGTCAAAGTCGACACGGTAGAACACTTGCTCTCGGCCATGGCTGGCCTTGGCATCGATAACGCCTACGTCGAGCTCTCTGCCTCCGAAGTT CCTATCATGGACGGCAGCGCAGGCCCTTTCGTATTCCTGATTCAATCGGCAGGCCTGGAAGAACAGGACGCGCCGAAGAAATTCATCCGTATCCTGCGTG AAGTCACAGTGGAGGAGGGCGGTAAACGCGCTACTTTCGTGCCTTTCGAAGGCTTCAAGGTCAGTTTCGAGATCGATTTCGATCACCCCGTCTTCCGTGA TCGCACCCAGAGTGCAAGCGTGGACTTTTCCAGTACTTCCTTCGTGAAGGAAGTCAGCCGTGCCCGGACCTTCGGGTTCATGAGTGATATCGAGTACCTG CGCAAGCACAACCTCGCACTCGGCGGCAGCGTGGAAAACGCCATTGTGGTCGACAAGGACGGTGTACTGAACGAAGACGGCCTGCGTTACGAGGACGAAT TCGTCAAACACAAAATCCTCGACGCCATCGGTGACCTCTACCTGCTGGGCAATAGCCTGATTGGTGAGTTCCGGGGTTTCAAATCGGGGCATGCACTGAA CAACCGTCTCCTGCGCACGTTGATCGAGCAGAAAGACGCTTGGGAAGTGGTGACTTTCGAGGATGCCAGTACGGCACCTATTTCTTACATGCGTCCTGTC GCGGCCGTGTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
DNA Sequence Downstream of Gene |
GCAAGCTTTACTCTCTTTCCTTTTGTTCTTTAAAGGCTGCCCTCGGGTGGCCTTTTTTTATGATTTTTTTCTGGAAAGTCAGTGCTCGCAGAGGTCTTGC AGCGATCAGGCAGGACTATTTTCTGTCTTTTGCATGGCTGGCCAGCCTTTCCAGCGCGGCACGCAAGCGCGGATCGGTAATGCCTTCAGCGGTGGCCTGA ATGTTTTCGGCAGCTACTGCCGACAGGTCGATCGTGTGCGTGGCGGCTCCGCGTGGCGCTTCGGGCGGCTGCACCTTGAACACAATGCGGGTCAGGTTGA TGAATTCGTCGAAGGCCATCAGTTGTCGGTGCAGGCGTTTCTGCTGATAGCGCAGGCGTGTGGCCCAGTGACCGTCCGTCACGATCAGCAGCAAGGTGCC TTCGCGCCAGGATGCCACGTGACAATGTTCGCGGGCCGCAGGTTGCAGCTGGCTTTCGAGCAGGCGCTGCCAGTGGCTGAGTCGCTCGGCATGGCGAAAT
|
|
Amino Acid Sequence |
>UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase
MIKQRTLKNIIRATGVGLHSGEKVYLTLKPAPVNTGIVFCRADLDPVVQIPARAENVGDTTLSTTLVNGDVKVDTVEHLLSAMAGLGIDNAYVELSASEV PIMDGSAGPFVFLIQSAGLEEQDAPKKFIRILREVTVEEGGKRATFVPFEGFKVSFEIDFDHPVFRDRTQSASVDFSSTSFVKEVSRARTFGFMSDIEYL RKHNLALGGSVENAIVVDKDGVLNEDGLRYEDEFVKHKILDAIGDLYLLGNSLIGEFRGFKSGHALNNRLLRTLIEQKDAWEVVTFEDASTAPISYMRPV AAV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|