Pseudomonas syringae UB0390, IV03_RS06730
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae strain UB0390 contig44.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCGTTGCTGGTAGTGTTCCTCTGTCTGGCGGCACTGTATGAAAGCTGGTCGATTCCGATCGCGGTCATCCTCGTGGTGCCACTGGGGGTTATCGGTGCAC TGATGGCAACCAGCCTGCGCGGCCTGTCCAACGACGTGTTCTTCCAGGTCGGGTTGCTGGTAACGGTGGGTCTGGCGGCGAAAAACGCCATTCTGATCGT CGAGTTCGCCAAAGAGCTTCACGAACAGGGCAAGAGCCTGGTCGACGCGGCGATCGAGGCCTGCCGCATGCGTCTGCGCCCGATCATCATGACCTCCATG GCGTTCATCCTCGGCGTTGTGCCGCTGGCGATTTCGTCGGGTGCGGGTTCAGGCAGTCAGCATTCGATTGGTACTGGCGTAATTGGCGGTATGATCACCG CAGTTATTCTGGCGATCTTCTGGGTGCCCCTGTTCTTCGTAACGGTTTCAGGGCTCTTCAAGAGCAAGCAGAAACATATTTCACACGATGAGGCTGGCCA
|
|
| DNA Sequence for Gene |
>IV03_RS06730
ATGAGCAAGTCATTGATCTCACTTGCAGTTACCGCGTTCATTCTCGGCGGCTGCTCTTTGATCCCCGATTACAAGCAGCCGGAAGCACCGGTCGCGGCAC AATATCCGCAAGGACCGGCGTACTCGCCGGTCGAAGGCGCCAAAATGGCCGCCGCGGAACAAGGCTGGCGGCACTTCTTCAATGACCCGGCGCTGCAACA GCTGATCCAGACTGCACTGCTCAACAACCGTGACCTGCGGGTTGCGGCGCTGAACATCGACGCGTACCGCGCCCAGTACCGTATCCAGCGCTCGGACCTG TTCCCTGCTGTTTCGGCCACCGGTAGCGGCTCACGTCAGCGGGTGCCGGCCGACCAGTCGCAAACCGGTCAGTCCGGCATCACCAGCAGCTACTCGGCCA CTCTGGGTGTCAGCTCTTACGAGCTGGACCTCTTCGGCCGGGTACGCAGCCTCAGCGAGCAGGCGCTGGAGACCTACTTCTCCAGTGAGGAAGCACGTCG CAGTACCCAGATCAGTCTGGTGGCCAGCGTCGCCAATGCCTACATGACCTGGCAGGCCGACAAGGAACTGCTCAAGCTGACGCAGGACACCCTGAAGACC TACGAGGAAAGCTTCCGTCTGACCTCGCGCGCCAGCGAAGTCGGCGTTTCTTCGGCACTGGACCTGAGCCAGTCGCGCACCGCCGTCGAAAGCGCGCGCG CCAAACTGGCCCAGTACCAGCGCCTGGTTGCCCAGGATCAGAACAGCCTGGTGCTGCTGCTCGGCACCAGCCTGCCTGACAACCTGCCGGCCAGCCACTT GCTCGATTCCGACATGCTGACCGAAATGCCGGCAGGCCTGCCGTCCGACCTGCTGCAGCGTCGTCCGGACATTCTGGAGGCCGAGCACTCGCTCAAGGCG GCCAACGCCAACATCGGCGCGGCACGTGCAGCGTTCTTCCCGAGCATCAGCCTGACGGCCAGTGCCGGGACCAGCAGCAGCGAGCTGTCCGGCCTGTTCA AGGGCGGGTCGGGTGCCTGGCTGTTCCAGCCAAGCATCAACATCCCGATCTTCAACGCCGGCAACCTGCGCGCCAGCCTGGACTACTCGAAAATCCAGAA GGAAATCAGCGTCGCCAACTACGAGAAGGCGATTCAGACCGCCTTCCAGGAAGTGTCCGACGGCCTGGCTTCGCGCAAGACCTATGACGAGCAGCTCCAG GCGCAACGTGACTTCGTCGCGGCCAACCAGGACTACTACCGTCTGGCCGAGCGTCGCTACCGGATCGGCATCGATAGCAACCTGACCTTCCTCGACGCCC AGCGCTCGCTGTTCAGTGCGCAACAAACACTGATCACCGATCGCCTGTCGCAGCTGACCAGCGAGGTCAACCTGTACAAGGCCCTCGGCGGCGGCTGGTA TGAAAGGACCGGACAGACCGAAACCATCTCCAAGGAGAAGCCTTCGGTTCAGCTGTTCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TAGACAGCGGCACACAAAAAAACCACCTGATCAGGTGGTTTTTTTGTGGCCGAAACAAACCTGCAATCAATGATCCTGATGCAGGTACTTGGGCTCTTTG GGCAAACGCAGACTGAACAGGAACGCTACCGCCATCATGGCCGTCACGTACCAGTAAAAGCTGTTCTCCATACCGGCACTCTTGAGTTTCAGTGCAACCC ACTCAGCCGAGCCGCCGAACATTGCGTTGGCCACCGCGTACGCCAGACCCACGCCCAGTGCACGAACCTGAGGCGGAAACATCTCGGCTTTGACCAGCCC GCTGATCGAGGTGTAGAAGCTGACGATGGCCAGCGCCAGGGTAATCAGCAGAAAGGCAATGAACGGATTGGTGGTGGTCTTGAGCGTCATCAGAATCGGC ACTGTGCACAGCGTACCCAGCGCGCCGAACAGGAGCATCGAATTACGCCGGCCGATACGGTCCGCGAGCATGCCGAAGAACGGCTGCATGCACATGTACA
|
|
| Amino Acid Sequence |
>multidrug transporter
MSKSLISLAVTAFILGGCSLIPDYKQPEAPVAAQYPQGPAYSPVEGAKMAAAEQGWRHFFNDPALQQLIQTALLNNRDLRVAALNIDAYRAQYRIQRSDL FPAVSATGSGSRQRVPADQSQTGQSGITSSYSATLGVSSYELDLFGRVRSLSEQALETYFSSEEARRSTQISLVASVANAYMTWQADKELLKLTQDTLKT YEESFRLTSRASEVGVSSALDLSQSRTAVESARAKLAQYQRLVAQDQNSLVLLLGTSLPDNLPASHLLDSDMLTEMPAGLPSDLLQRRPDILEAEHSLKA ANANIGAARAAFFPSISLTASAGTSSSELSGLFKGGSGAWLFQPSINIPIFNAGNLRASLDYSKIQKEISVANYEKAIQTAFQEVSDGLASRKTYDEQLQ AQRDFVAANQDYYRLAERRYRIGIDSNLTFLDAQRSLFSAQQTLITDRLSQLTSEVNLYKALGGGWYERTGQTETISKEKPSVQLF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|