Pseudomonas syringae UB0390, IV03_RS08630
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae strain UB0390 contig30.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCGAGCTTTTTCAGGAGTTGCTGGCTTGATCGAACCGTTTCCAGGCATCAGGCAACAGGTTAAAAGCATGCCGTTGGTGGCATGCCGCTTGATGACTGGT GCTGTCCGCTTGTAAACTACCGAGTCCGCTCGCCCATCCGGGCATCGCGCATCCGCATTTGCTACGAGGAATACCCATGGCCCGCGTAACCGTTGAAGAC TGCCTAGAACACGTGGATAACCGCTTTGAGCTGGTCATGCTCTCTACCAAGCGTGCCCGTCAACTGGCAACCGGCGGCAAAGAACCAAAGCTGGCCTGGG AAAACGACAAGCCTACCGTTATGGCCCTGCGTGAAATCGCGGCTGGCGTGATGGATTACTCTGTAATCGCAGAAGCTGAAATCGTTGAAGATGAACCATT GTTCGCAGCGTTCGAGGACGAGTCCAACGAGGCCGTCTAAGCCTATGCCAGGTCGACGTAGTACGGCGCAGGGTAAAAGCCATTGGCAAGGGGTAGCGCC
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| DNA Sequence for Gene |
>IV03_RS08630
TTGCCGAGCATAGACGCCCTCGCCGACAGACTGTCGGCCTACCTCGGCAAGGACCAGGTCAATCTGGTCCGCCGAGCGTATTTCTACGCCGAACAAGCCC ACGATGGCCAGCGCCGTCGCAGTGGTGAAGCCTACGTCACTCATCCTCTTGCGGTGGCGAATATTCTTGCCGACATGCACATGGACCATCAGAGCCTGAT GGCTGCGATGCTGCATGACGTTATCGAAGACACCGGGATTGCCAAGGAAGCGCTCAGCGCTCAGTTTGGCGAGACCGTCGCGGAACTGGTCGACGGGGTC AGCAAACTGACCCAGATGAACTTCGAGACCAAGGCCGAAGCCCAGGCGGAAAACTTCCAGAAAATGGCCATGGCCATGGCGCGCGACATTCGCGTCATCC TGGTCAAGCTCGCCGATCGCCTGCACAACATGCGCACGCTAGAAGTCCTGTCCGGCGAAAAGCGTCGGCGCATCGCCAAGGAAACCCTCGAAATCTATGC CCCCATCGCCAATCGGCTGGGCATGCACAGTGTGCGCATCGAATTCGAAGACCTGGGCTTCAAGGCGATGTACCCGATGCGCTCCTCGCGAATCAACCAG GCGGTCAAGCGCGCCAGGGGCAATCGCAAGGAACTGGTCAACAAGATCGAAGAGTCCCTGAGTCATTGCCTGGCCGTCGATGGTATCGAAGGCGACGTCA GTGGGCGGCAGAAGCATTTGTATGGCATCTACAAGAAGATGCGCGGCAAGCGTCGCGCCTTCAACGAAATCATGGATGTCTACGCGTTCCGAATCATCGT CGACAAGGTCGACACCTGCTATCGCGTGCTCGGCGCTGTACATAATTTGTACAAGCCGCTGCCCGGTCGCTTCAAGGATTACATCGCGATCCCCAAGGCC AACGGCTATCAGTCTCTGCATACGACCTTGTTCGGCATGCACGGCGTGCCTATCGAGATCCAGATTCGCACCCGCGAAATGGAAGAAATGGCCAACAACG GCATCGCGGCACACTGGCTGTACAAATCCAGTGATGACGAGCAGCCCAAGGGCACTCACGCCCGAGCCCGACAGTGGGTCAAGGGCGTGCTGGAAATGCA GCAGCGTGCCGGCAACTCTCTGGAGTTCATCGAAAGCGTCAAGATCGACCTGTTCCCGGACGAGGTCTACGTCTTCACGCCCAAAGGCCGAATCATGGAG CTGCCCAAAGGCTCCACAGCGGTGGATTTCGCCTACGCGGTGCACACCGATGTCGGCAACAGCTGCATTGCCTGCCGGATCAACCGCCGACTGGCACCAC TCTCCGAACCGCTGCAGAGCGGCTCGACCGTCGAGATTGTCAGCGCTCCCGGCGCACGTCCGAATCCGGCCTGGCTGAACTTCGTCGTCACCGGCAAGGC GCGCACGCACATTCGTCACGCGCTCAAACTGCAACGCCGCTCCGAGTCGATCAATCTGGGCGAGCGCCTGCTGAACAAGGTCCTCAACGGCTTTGAATGC AGCCTCGACAAGATCGGCCAGGAACGCATTCAACTGGTGCTCAACGAATACCGGGTTGAAGTGCTGGAAGACCTGCTCGAAGACATCGGCCTGGGTAATC GCATGGCTTATGTCGTTGCCCGCCGCCTGCTGGGCGAAGGCGATCAGTTGCCGAGCCCGGAAGGTCCGCTGGCGATTCGTGGCACCGAAGGTCTGGTGCT CAGCTACGCGAAATGCTGTACGCCAATTCCGGGCGACCCGATTGTCGGCCACCTGTCTGCAGGCAAGGGCATGGTTGTGCACCTCGACAACTGCCGCAAC ATCAGCGAAATCCGCCACAATCCGGAAAAATGCATCCAGCTGTCCTGGGCCAAGGACGTGACGGGCGAATTCAACGTCGAGCTGCGTGTCGAACTCGAGC ATCAGCGCGGCCTGATCGCGCTGCTGGCCAGCAGCGTCAATGCGGCGGACGGCAATATCGAAAAAATCAGCATGGACGAACGCGATGGCCGCATCAGCGT GGTCCAACTGGTGGTCAGCGTGCACGACCGTGTGCACCTGGCTCGTGTGATCAAGAAACTGCGCGCCCTGACCGGTGTCACACGCATCACCCGGATGCGC GCGTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCATCCCACTATCAGGAGTTCTCATGACCAAGACTGTCATCACCAGCGATAAAGCCCCTGCGGCCATTGGCCCTTATTCACAGGCCATCAAAGCTGGCA ATACCGTCTACATGTCCGGACAGATCCCGCTGGACCCGAGCACCATGGAACTGGTCGAGGGTATCGAAGCCCAGATCACGCAGGTTTTCGAAAACCTGAA GTCGGTTGCCGAAGCGGCGGGCGGATCCTTCAAGGACATCGTCAAACTGAACATCTTTCTGACCGACCTGGGCCACTTCGCCAAGGTCAACGAGCTCATG AGCACCTACTTCACTCAGCCTTATCCGGCCCGTGCAGCCATCGGCGTTGCGGCCTTGCCGCGTGGCGCCCAGGTTGAAATGGACGCGATTCTCGTCATCG AATAAATCCCCGACGGAGCGTGCCTTGCGCTCCGTTCTCCCTGAAGGAAGGAATCCGTTATGCGCTCCGCGCTCGCCATCTCGCTGCTCGCCGTCATTCT
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| Amino Acid Sequence |
>bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase
MPSIDALADRLSAYLGKDQVNLVRRAYFYAEQAHDGQRRRSGEAYVTHPLAVANILADMHMDHQSLMAAMLHDVIEDTGIAKEALSAQFGETVAELVDGV SKLTQMNFETKAEAQAENFQKMAMAMARDIRVILVKLADRLHNMRTLEVLSGEKRRRIAKETLEIYAPIANRLGMHSVRIEFEDLGFKAMYPMRSSRINQ AVKRARGNRKELVNKIEESLSHCLAVDGIEGDVSGRQKHLYGIYKKMRGKRRAFNEIMDVYAFRIIVDKVDTCYRVLGAVHNLYKPLPGRFKDYIAIPKA NGYQSLHTTLFGMHGVPIEIQIRTREMEEMANNGIAAHWLYKSSDDEQPKGTHARARQWVKGVLEMQQRAGNSLEFIESVKIDLFPDEVYVFTPKGRIME LPKGSTAVDFAYAVHTDVGNSCIACRINRRLAPLSEPLQSGSTVEIVSAPGARPNPAWLNFVVTGKARTHIRHALKLQRRSESINLGERLLNKVLNGFEC SLDKIGQERIQLVLNEYRVEVLEDLLEDIGLGNRMAYVVARRLLGEGDQLPSPEGPLAIRGTEGLVLSYAKCCTPIPGDPIVGHLSAGKGMVVHLDNCRN ISEIRHNPEKCIQLSWAKDVTGEFNVELRVELEHQRGLIALLASSVNAADGNIEKISMDERDGRISVVQLVVSVHDRVHLARVIKKLRALTGVTRITRMR A
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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