Pseudomonas syringae UB0390, IV03_RS10605
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae strain UB0390 contig22.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACGTAGCTAACAGATTTTTTTGGAGTGGATAGCTTTTCTGAACCGCTTGCCTCGCAAGTCGTTCGCAGCCAGACAAAGAACAATAAAACTGCCTCGAGGC AGCTGACGAACTGGTTGGATCACTACGATGAAAGTGTCATCAGCGCTCAAAAAAATACGTTTGCTCTTGGTCCCGCATGTGGACCGCTCAAAAAAGATGT GAAGGGTAAGGTCGCCAAAAACAACAACAGGCCTCCCGAAAAACAAAAAAGAGCATAGCAACATACCTTGAAGGGGAGCCCAGGCTCCCCTTCGTGCTTT CCGGCGTTCCGCCCCTCCTCCCTCATGACTGAAAAATACAGGCTGATCACTCTTCGTCGGCATCGGCAACGACGTTGACAGCAAAACCCTACAGGTTTAC GTTAACGTAAAGGTCATGGCTGATAGACGCTATGGCCGCATCCAGAAAGACGCGCCATCCCGCACAAGGCGCCACTCAAGAACAAAAAAAGGAACGCCCC
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| DNA Sequence for Gene |
>IV03_RS10605
ATGAGTTACCCCAGCCTGAACTTCGCCCTGGGCGAAACCATCGACATGCTGCGCGATCAGCTGCAATCCTTTGTCGCCGCAGAGCTTGCCCCGCGCGCAG CGCAGATCGACAAGGACAACCTGTTCCCCGCCGATATGTGGCGCAAGTTCGGTGAAATGGGCGTATTGGGGATCACTGTCAGCGAAGAATACGGTGGCGC GGGCCTGGGTTATCTGGCGCACGTCGTGGCGATGGAAGAAATCAGCCGTGGTTCGGCATCCGTTGCGCTGTCCTATGGCGCCCATTCCAATCTGTGCGTT AACCAGATCAACCGCAATGGCAGCCCGGCGCAAAAGGCCCGATACCTGCCGAAGCTGATCAGCGGCGAACACGTTGGCGCGCTGGCCATGAGCGAACCCA ATGCAGGCTCGGACGTGGTGTCGATGAAACTGCGCGCCGACAAGCGCGGTGATCGCTATGTGCTCAACGGCAGCAAGACCTGGATCACCAATGGCCCGGA TGCCAACACCTATGTGATCTACGCCAAGACCGATCTGGAAAAGGCAGCCCACGGCATCAGTGCGTTTATCGTCGAACGCGACTGGAAAGGCTTCTCGCGC GGCAGCAAGTTCGACAAGCTGGGCATGCGCGGCTCCAACACCTGCGAACTGTTTTTCGATGATGTCGAGGTGCCCGAGGAGAACCTGCTGGGCGTGCTTG ATGGCGGAGTCAGGGTGCTGATGAGCGGCCTCGATTACGAACGCGTCGTGCTCTCCGGCGGACCGACCGGGATCATGCAGGCGTGCATGGACGTGGTGGT GCCGTACATTCACGACCGCAAACAGTTCGGCCAGAGCATCGGCGAGTTTCAGCTGATTCAGGGCAAGGTCGCAGACATGTACACCCAGCTCAATGCCAGC CGGGCCTATCTGTATGCGGTCGCCCAGGCCTGTGACCGCGGCGAGACCACTCGCAAGGACGCTGCAGGGGTGATCCTGTACAGCGCCGAGCGGGCCACGC AGATGGCGCTGGAGGCCATCCAGATTCTGGGCGGCAATGGCTACATCAACGAGTTTCCGGCGGGCCGACTGTTGCGCGACGCCAAACTCTACGAGATCGG CGCAGGCACCAGTGAAATCCGGCGCATGCTCATCGGTCGCGAACTGTTCAACGAAACCCGTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTGCGGAGCCACCATGACCATCCTGCAGACCCGAATCAACACCCGCTCGCCTGAATTCATCCTCAACCGCGATGCCCTGCTCAAGCAGGTCGAAGCGCTG CGCTTGCTGTTGAGCAACGTCCAGCAAGGTGGCGGCCCCAAGGCCCAGGAGCGACACACATCACGCGGCAAGTTGCTGCCGCGCGAGCGTATCAATCGTT TGCTGGACACCGGTTCGCCGTTTCTGGAAATCGGCCAACTGGCTGCACATGAGGTGTACGGCGAAGACGTCCCGGCCGCTGGGGTGATCGCCGGAATCGG CCGGGTCGAGGGCGTCGAATGCATGATCATCGCCAACGATGCCACGGTCAAAGGCGGCTCCTATTACCCGCTGACCGTCAAAAAGCATTTGCGCGCACAG ACGATCGCCCAGCAGAACCGCCTGCCGTGCATCTATCTGGTGGATTCCGGCGGCGCCAACCTGCCGCGTCAGGATGAGGTGTTTCCGGATCGCGAACATT
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| Amino Acid Sequence |
>isovaleryl-CoA dehydrogenase
MSYPSLNFALGETIDMLRDQLQSFVAAELAPRAAQIDKDNLFPADMWRKFGEMGVLGITVSEEYGGAGLGYLAHVVAMEEISRGSASVALSYGAHSNLCV NQINRNGSPAQKARYLPKLISGEHVGALAMSEPNAGSDVVSMKLRADKRGDRYVLNGSKTWITNGPDANTYVIYAKTDLEKAAHGISAFIVERDWKGFSR GSKFDKLGMRGSNTCELFFDDVEVPEENLLGVLDGGVRVLMSGLDYERVVLSGGPTGIMQACMDVVVPYIHDRKQFGQSIGEFQLIQGKVADMYTQLNAS RAYLYAVAQACDRGETTRKDAAGVILYSAERATQMALEAIQILGGNGYINEFPAGRLLRDAKLYEIGAGTSEIRRMLIGRELFNETR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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