Pseudomonas syringae UB0390, IV03_RS12110
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae strain UB0390 contig19.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACTCACCGTTGGCCTGCAGTGTGCTCAGCAGGCCATCCTGCGAGAATTGCTTCATCTTGAGCGCGTATTCGATGGCTTCGCCGTCGCCACCCAGTTGCGG CGCGTCCGCTGTACCGGTGATCGGCAGTACCTCGAGGTAGAGGTCGTCGGTCAGGCGCTGATTCAGGCGCAACTCTTCCTCGCAGAAATGCTTGCGCAGG GCCAAGGTGGTGAAATCCAGAAAGCCGAAGTTCATCGGTTTTTTGAATTTGTAGGCATACGGACCCGTCAGCAGCACCCAGGAAATGTGCGTTTCGATGA CCTGGAAACTCTCCACCGGATGGGGGAAGAGGGCAGGGTTCTGCAGGGCAGCAATCAAAGACTGGCTCACGGTCGATCCTTCAGGAATGTGTTCAAGATG TAAGTACACGATGCCGCCATTATGGCCGCTTGGCGCGAGGCTGCAAACCGCTGACTCGGGCGTCTGTCGATCCTTGGCAAAGTGCGTATAATCCGCGCCC
|
|
| DNA Sequence for Gene |
>IV03_RS12110
ATGACTCGATCCCGCACCTCTCGTTCTGCAAAAAAACAACCCCCCCGCAGCCTCAACAAGTGGCTGGGCTGGGCGTTGAAGCTCGGTATTGTCGGCCTGG TTCTGCTGGGCGGCCTGGCCATTTACCTCGATGCAATCGTTCAGGAGAAATTCTCCGGCAAGCGCTGGACCATTCCGGCCAAGGTCTATGCACGACCGCT GGAGCTGTTCGTCGGACAGAAGCTGAGCCGCGATGACTTTCTCCTCGAACTGGACGCCCTGGGCTATCGCCGCGAAAGCGTGGCGAACGGCCCCGGCGCC GCGGCGGTGAACGGCAATACTGTCGATCTCAACACGCGTGGCTTTCAGTTCTATGAAGGCACCGACGCAGCGCAGCAGGTTCGCGTGCGCTTTTCCGGTG ATTACGTAGCCGACCTGTCTTCGGGCAATGGTGCCAAGCTTGCAGTGGCGCGGCTTGAGCCGTTGCTGATCGGCGGCCTGTACCCGAAGAATCTGGAAGA CCGGATTCTGATCAAGCTGGATCAGGCGCCGCCTTATCTACTCGACGGGCTGGTGGCGGTCGAGGACCGGGATTTCTATCACCACTTCGGTGTGTCACCC AAATCCATCGCCCGGGCGATCTGGGTCAACAGCTCTAAGGGGCAGATGCGGCAGGGCGGCAGTACGCTGACCCAGCAGTTGGTCAAGAACTTCTACCTGA CCAACGAGCGCAGCCTGACCCGCAAGCTGACCGAGGCCATGATGGCGATCCTGCTGGAGATTCATTACAGCAAGCAGGAAATCCTCGAGGCCTATCTCAA CGAAGTGTTCGTCGGGCAGGACGGCCAGCGTGCCGTTCACGGTTTTGGTCTGGCCAGTCAGTATTTCTTCAGCCAGCCGCTCTCCGAACTGAAGATCCAT CAGGTGGCGATGCTGGTCGGTCTGGTCAAAGGACCGTCTTTCTATAACCCGCGTCGCAATCCGGAGCGTGCTATGGAACGTCGCAACCTGGTGCTCGATC TGTTCGAGCAGCAGGGCGTGGCCACACCGGAAGTGGTTGCCGCTGCGAAGAAAATGCCACTGGGTGTGACCAAGACCGGGACCCTCGCCGACAGTTCGTT CCCGGCGTTCCTCGATCTGGTCAAGCGTCAGCTGCGCGAAGACTATCGCGACGAAGACTTGACCGAAGAAGGACTGCGGATATTTACCAGCTTCGATCCG ATTTTGCAGATGAAGTCCCAGGCTGCCATGGACGATACGTTCAAGAAGCTCGCCGGGCGCAAGGGCTCTGATGAGGTGGAGTCGGCCATGGTCGTCACCA ACCCGGAAACCGGCGAAGTGCAGGCATTGATCGGTGGGCGTGAGGCCGGTTTTTCGGGCTTCAACCGGGCGATTGACGCGGTGCGGCCGATCGGCTCGCT GGTCAAGCCTGCTATCTACCTGACGGCTCTCGAACGACCAAGCCAGTACACGTTGACCAGCTGGATCGCCGACGAATTGTTCCAGGTCAAAGGCGCCGAT GGCCAGATCTGGAAACCGCAGAACTACGATCACAAGTCACACGGCAATATCTTCCTGTATCAGGGGCTGGCGCATTCGTACAACCTGTCGACCGCCAAGC TGGGTCTTGAGCTGGGCATTCCAAACGTGTTCAAAACCCTGGCCAGGCTGGGTGTGACGCGCGAATGGCCTGCCTACCCGTCGATGCTGCTGGGTGCGGG CGGCTTGAGTCCGATGGAAGTGGCCACCATGTATCAGACCATCGCCAGCGGCGGGTTCAATACGCCGATGCGTGGTATTCGCAGCGTGCTCACCGCTGAA GGCGAGCCGCTCAAACGTTATCCGTTCCAGATCGAACAGCGCTTCGATCCGGGTGCGATTTACCTGGTGCAGAATGCGATGCAGCGGGTCATGCGTGAAG GTACGGGCAAATCTGTTTACAACGTGTTGCCGAGCTCGTTGAATCTGGCAGGCAAGACCGGCACCAGTAACGACTCGCGCGACAGCTGGTTTGCCGGGTT CAGTCAGGATCTGCTGGCCGTGGTGTGGATGGGCCGGGATGACAACGGCAAGACACCGTTTACCGGTGCCACCGGTGCCCTGCAGGTCTGGACCAGTTTC ATGCGCAAGGCCGGTCCGCTACCCCTGGACATGGCGATGCCGGACAACGTCGTTCAGGCGTGGGTCGATGCGCAGACCGGTCAGGGTTCGGATGCAAGCT GCCCGAATGCCGTGCAGATGCCGTATATTCGCGGCAGTGAGCCCCAGCCCGGCGCGACATGCGGCGGCGCTCCGGCACCTGCCACTGAGGTGATGGACTG GGTCAAGGGTTGGTTGAACTAG
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCAATCGAGGTTTTGAAGTGAATAAATGGTGGATTCCAGCTTTAACGGCACTGGCCTTGCTGAACGGCTGCGCCAGTGTGGAACGCGGCTCGATTCCGGT CGTGGATTCGAGCTCCAAGGTGTCCAACGGTGAACGTGCGGCAGCGTCGCGTAACGGTACTTACCGCACCAACACGGCTCCGGTGCAACAGCAGCCGCAA GCCGTACCGCAGGACTCTGGCGTTGTGGTGATGGTGCCGGGCGCGGGTGGTGCCGATGCCGGGCAGAGTTACTCTGCACCCGCCAGTCAGGCACCGTTCA GTGTCAATACTCCGCCAGTCGATGCCGCTCCGGTCAATCAGGCCCCGGTCAGTCAGGCTCCTGCGAACAACAGTTACAGCATGCCGGCTGCCTCTGCCCC GACCGGAATCCCGTCCAGCGGTGGCGGTCTGTCAGAGGACGAGCAGCTTGACGGGCCCGTACTGGCATTGTTGACCACCGCACAGCAACAGCAGACCAGT
|
|
| Amino Acid Sequence |
>penicillin-binding protein 1B
MTRSRTSRSAKKQPPRSLNKWLGWALKLGIVGLVLLGGLAIYLDAIVQEKFSGKRWTIPAKVYARPLELFVGQKLSRDDFLLELDALGYRRESVANGPGA AAVNGNTVDLNTRGFQFYEGTDAAQQVRVRFSGDYVADLSSGNGAKLAVARLEPLLIGGLYPKNLEDRILIKLDQAPPYLLDGLVAVEDRDFYHHFGVSP KSIARAIWVNSSKGQMRQGGSTLTQQLVKNFYLTNERSLTRKLTEAMMAILLEIHYSKQEILEAYLNEVFVGQDGQRAVHGFGLASQYFFSQPLSELKIH QVAMLVGLVKGPSFYNPRRNPERAMERRNLVLDLFEQQGVATPEVVAAAKKMPLGVTKTGTLADSSFPAFLDLVKRQLREDYRDEDLTEEGLRIFTSFDP ILQMKSQAAMDDTFKKLAGRKGSDEVESAMVVTNPETGEVQALIGGREAGFSGFNRAIDAVRPIGSLVKPAIYLTALERPSQYTLTSWIADELFQVKGAD GQIWKPQNYDHKSHGNIFLYQGLAHSYNLSTAKLGLELGIPNVFKTLARLGVTREWPAYPSMLLGAGGLSPMEVATMYQTIASGGFNTPMRGIRSVLTAE GEPLKRYPFQIEQRFDPGAIYLVQNAMQRVMREGTGKSVYNVLPSSLNLAGKTGTSNDSRDSWFAGFSQDLLAVVWMGRDDNGKTPFTGATGALQVWTSF MRKAGPLPLDMAMPDNVVQAWVDAQTGQGSDASCPNAVQMPYIRGSEPQPGATCGGAPAPATEVMDWVKGWLN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|