Pseudomonas syringae UB0390, IV03_RS12455
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae strain UB0390 contig18.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGCGATGCCGTGTTCAATGTTTACGAGTCCCTGTTCGTCAAGCCACCGACCGATCAGGCCGTGCAGGTCACGCTGCTCGATAACCCGACTATCAAAGTCA GCGGCAAGGTGCGCGAAGTGACCCCGGCGGTGTCGGCGCAAACCGGCACCTTGCAGATCAAGATCGCTCTGGACCCGCTGCCTGAAGGCATGGACCTGGG CTCGGTGGTCAGTGTGGCGCTGAGTGCACCGGCCAACGCCAGTGTCGAGTTGCCGTGGGCGGCGCTGACCAAGGACCTTGGCGAGCAGTTGGGCAAGCCT GCCGTGTGGGTGGTGGACGAGCAGGGTAAGGTCAATCTGCGCAAGGTCACCGTCACCCGTTACCTGACCGCCAAAGTCATCATTGGCGACGGGCTCAAGA GTGGAGAGAAAGTCGTGGTGGCAGGCGGACAGTTGTTACACCCGGACATGCAGGTCGAAATTGCCGAACAGCCCAAACAACAGAACGCACAGGTGCAGCC
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| DNA Sequence for Gene |
>IV03_RS12455
ATGAAGCGTATGTCATGCCTGCCGCTGGGCGGCCTGCTGTTGAGCGGTTTTCTATTGAGTGGCTGTGGCAAGGATGAAACACCTCCGGAACCGGTGCGCC CCGTCGTCTTCGTCGAAGCAAAGCCTGAGTCGAATCAGGATTTCGGGCGTTTCGCCGGTAATATCCAGGCGCGTTATCAGAGTGTGCTGGGCTTTCGTGT CGCGGGTCGCATCGCCCGGCGCGACGTTGACGTAGGCGCTGAGGTCAAGAAAGGCGATTTGCTCGCAACCCTCGATCCGACCGATCAGCAGAACGCCGTT CGTGCCCGGCAGGGCGACCTGGCCAATGTTCAGGCGCAGTTCATCAACGCCCAGGCCAATGCTCGCCGCCAGCAGGAGCTGTTCGATCGCGGTGTCGGTG CCCAGGCGCAACTGGACATCGCCCTGACCGATCTGAAGACCGCCAGCTCGTCGCAGGAACAGGCCAAGGCCGCGGCTCAACAGGCCCGCGATCAATTGAG TTACAGCGAGCTGCGCAGTGATCACGACGCCGTGGTCACCGAATGGAAGGTCGAAGCCGGACAGGTGGTGACAGCCGGTCAGGAAGTCGTGACCCTGGCG CGGCCGGACATCAAGGAAGCGGTGATCGACCTGCCCGATACACTGGCCGACCAGTTGCCTGCCGACGTGGTATTCACCGTCGCCAGTCAACTGAATCCGG AAGTGAACACCACCGCCACCATTCGCGAAATCGAACCCCAGGCTGATCGCACGACACGCACTCGTCGTGCGCGTCTGTCGCTGGCGCAAACACCTGCGGC GTTCCGCCTGGGCACGGCCATCAGCGTGACGCTTAGCTCGACCATCACGCCGCGCATGCGTCTGCCGATCAATGCCTTGCAGGAGGTCGATGGCAAACGC CAGATATGGATCTTCGACCCGCAAAGCCAGACGGTGAACCCCAGAACGGTGACTATTGTCAGCCGTGACCGCGATTCCTTCGTGCTGAACGATGGCGTCA AAGCGGGTGAAAAAGTGGTGAGCGCGGGCGTCAACAGCCTCAAGCCGGGCCAGAAAGTCAAAGTCGATGAGGAAAGCCCGCGATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AAGGGAATTTCAATTTATCCGAGTGGGCCATCAAGCATCAGTCGTTTGTCTGGTACCTGATGTTCGTCGCGCTGTTGATGGGCGTGTTTTCCTACATGAA GCTGGGGCGCGAGGAAGACCCGTCCTTCACCATCAAGACCATGATTATCCAGACCCGCTGGCCGGGCGCGACGGTGGACGAGACTCTCGAGCAGGTCACC GACCGCATCGAGAAGAAGCTCGAAGAGCTGGACTCGCTGGACTACGTCAAGAGCTATACCCGACCGGGCGAATCCACGGTCTTTGTGTACCTGCGTGACA CCACCAGCGCCAAGGCGATACCGGAAATCTGGTATCAGGTGCGCAAGAAAGTCGATGACATCCGTGGCCAGTTTCCGCAGGGGCTGCAAGGCCCGTCGTT CAACGACGAGTTCGGCGATGTGTACGGCTCGATCTACGCGTTTACCGCAGACGGTTTCTCGATGCGTCAGTTGCGTGACTATGTCGAGAAGGTCCGCGCC
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| Amino Acid Sequence |
>RND transporter
MKRMSCLPLGGLLLSGFLLSGCGKDETPPEPVRPVVFVEAKPESNQDFGRFAGNIQARYQSVLGFRVAGRIARRDVDVGAEVKKGDLLATLDPTDQQNAV RARQGDLANVQAQFINAQANARRQQELFDRGVGAQAQLDIALTDLKTASSSQEQAKAAAQQARDQLSYSELRSDHDAVVTEWKVEAGQVVTAGQEVVTLA RPDIKEAVIDLPDTLADQLPADVVFTVASQLNPEVNTTATIREIEPQADRTTRTRRARLSLAQTPAAFRLGTAISVTLSSTITPRMRLPINALQEVDGKR QIWIFDPQSQTVNPRTVTIVSRDRDSFVLNDGVKAGEKVVSAGVNSLKPGQKVKVDEESPR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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