Pseudomonas syringae UB0390, IV03_RS16475

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas syringae strain UB0390 contig11.1, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
TGATCTGACTGATAATCTGCCACCTCTTTTTACCCCTTCCGAGTACCGAGAGACAAGCGGGCGAGCGCCACCGTCGCGGCCCTTGCGAGCCCCTGGCCAA AGGGCCTGCCGGATTCTTGAGCCTTGCAGAAATGACCGTCTTCACGGCTCTAGAGTCTTGGAGGGTCAGCATAGGCTTTCGCTTATTTCCTTTAAATTAC AATCATTTTATTAGTCCGCTGCAGCCTTGATGCGAGTCCGTAGTCATGTACTGGACGGCTAGCGTTTCTGCATATATTTAATGACGACCTTAATACAATG TCGCAAAGGTCGGCGACCCCCTATCAATACTAAGCACATGATCCTTTGGTGCGGGCTAAAGGTCAGCGCTTGCACATTTAACTCCAAAAAAAGTTCAACA AATCGGATACAAGGTCGATACAAATAATTGACGCCGCCATAATGGCGTTCTAGTATCGCCCACCTTTTTTGATATCAATATGCTACCGCAAGGACGCGCC
DNA Sequence for Gene
>IV03_RS16475
GTGTATCTCCGTGCTCACAAACTGGCTTTGCTGCTCCTGCTCGCCATCGCGCCAGCTACCTCGCTTGCAGCCACTGCTCCCGCCAGCTTGCCAGGTGACC AGGATCTTATTCGTGACCGTCAGGATCGCCTGCTCGAAGAGCAGCGCCGCCGTCTTGAGGAGCTCAAGGACCTGCCGGGCAAACAAGCCGCACCTGCTGC CCCGAGTTCCCCGGCCGATACGCGCTGTTTCACCATCAATCGCATCGAACTCAAGGGCGCCGACTCGCTGTCGTCCGCCGAGCGCGATGCGCTGATCAAA CCCTATATTGGCCAGTGTCTTGGTGTCGCCCAGCTCAATGAGCTGCTCAAAGTCATTACCGATCACTACCTCGAAAAAGGCCTGGTGACGACTCGCGCCT ACCTGCCGCAACAGGACCTGTCCACCGGCGACCTGCAAGTGCTGGTCATCGAAGGCAAGCTGGAGCATTTGCGTGGCGATGCTGCCAGCGGTCTGTCGGC ACGTGAGCTGGCCATGACGTTTCCCGGCAGGGAAGGCCAGATGGTCAACCTGCGCGAAATCGAGCAGATGGTCGATCAGCTCAATCGCCTGCCATCCAAT CAGGCGCAGATGGAACTGACCCCCGGCCAGGTCGTCGGCGGCAGTGATGTAGTGGTCAAGAACACCCCGCAGAAACCATGGCGGGCCAACCTGTCACGTA CCAACGAAGGTCAGCGCAGCACCGGTGAGCAACAATGGAACGCCGGTCTTGAGTGGGATAATCCGTTGGGGCTGGCCGACCAGTTCAGCCTGCGCGGCGG CCACGATGCCATCAGCGACCGGCAGAAGGCCTCCCGCAATGCCTCGCTTGCCTACAGCCTGCCGTGGGGCTGGTGGACGTTCAGCTATCTGTACAACACC AGCGAATACCGTTCGGTGGCGCAGGCCTCGAACATCAACTTCAAGCAGGACGGCGACAGCCAGAACCACCAGTTCAGGGCCGAGCGGGTGGTGTATCGCG ACGCGCTGAGCAAGACCTCGCTCAATGCCGGTCTGTCCTACCTGCGCACCAACAACTACGTCGAAGACAGCAAACTGGCGGTCAGCAGCAATCGCATCAC CGAGGCGCAGTTCGGTATCAACCACGGGCGGCGAGTCGGCTCGGCGTTCGTCAACATCGATCTGGGCATGCAGCAAGGCATCGGTGCACTGGACGCGCAG GGCAACCACGATCCTCGCCCGGGTGAGGCCGATGCGCGGTATCGCAAATACACCGGCACCCTCAGCTACCTGCACCCCTTTCAACTGTGGGGCGAAAACC TGAGCTTCACCAGTCTGGCCACCGGGCAGCGCAGTGAGGATGTGTTGTTCAGTTCGCAACGCACCAGCCTGGGCGGATCGGCATCGGTGCGTGGTTACAA GGATGAGTTTCTGTCCGGCGACAGTGGCGGCTACTGGCGTAACGAGTTGCGCCTGACCCGTCCGGTGACGCTGGACTGGCTGCGCCCGGTGTTCGCCGAG TATGGCGCGGCTGCCGGTTACGACCAGGGTGTTATCCGCAACGATCGTTACAACGGCGATCAGCATGGGCGTTTGTCCAGTAACTCGTTCGAGTTGTTTA CCCGAGGCCAGCACGTTGCTGCCTCAGTGACCTTCGCTCATTCCCTGGAACGTCCCGATGTGATCGAGCGCGAAGCGCCGATCTATTTCCGTATGGACTT TTTCCTCTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TCACACCGTATTCAACCTACCTGTTTCGAGGTCACTCACATGGACGTTCACCAACTGGCTCTGCTCGCTCGTCAGCCTTCTGCTGTGCTGGTCGAGCGCC GGTCTTTCTGGGGAATGTCCAAGCGCGGCCTTGCGCTGATTCTCGCCAATGCGATGTTCTGGCAGCCGCTGCTGGTTCAAGCCGAAGGCATCGTGGTCAG CGGCACGAATACCAGTCTGAACCAGGCCGGCAATGGCGTGCCTATCGTCAATATTGCCGCGCCCAATGCCAGCGGCCTGTCACACAACCAGTATCAGCAG TTCAACGTCGACAGCCAGGGCGTCATCCTCAACAACTCCACCAACCAGACCCAGAGCACCCAGCTGGGCGGCATCATCGTCGGCAACTCCAACCTGCGCG GCACAGCGGCCAGCACCATCCTCAACGAAGTGGTCGGGGCCAACGCCAGTCAGCTCAGGGGCTACACGGAAGTGGCCGGGCAGGCGGCGCGTGTCATCGT
Amino Acid Sequence
>ShlB family hemolysin secretion/activation protein
MYLRAHKLALLLLLAIAPATSLAATAPASLPGDQDLIRDRQDRLLEEQRRRLEELKDLPGKQAAPAAPSSPADTRCFTINRIELKGADSLSSAERDALIK PYIGQCLGVAQLNELLKVITDHYLEKGLVTTRAYLPQQDLSTGDLQVLVIEGKLEHLRGDAASGLSARELAMTFPGREGQMVNLREIEQMVDQLNRLPSN QAQMELTPGQVVGGSDVVVKNTPQKPWRANLSRTNEGQRSTGEQQWNAGLEWDNPLGLADQFSLRGGHDAISDRQKASRNASLAYSLPWGWWTFSYLYNT SEYRSVAQASNINFKQDGDSQNHQFRAERVVYRDALSKTSLNAGLSYLRTNNYVEDSKLAVSSNRITEAQFGINHGRRVGSAFVNIDLGMQQGIGALDAQ GNHDPRPGEADARYRKYTGTLSYLHPFQLWGENLSFTSLATGQRSEDVLFSSQRTSLGGSASVRGYKDEFLSGDSGGYWRNELRLTRPVTLDWLRPVFAE YGAAAGYDQGVIRNDRYNGDQHGRLSSNSFELFTRGQHVAASVTFAHSLERPDVIEREAPIYFRMDFFL
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site