Pseudomonas syringae UB0390, IV03_RS18035
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae strain UB0390 contig9.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATGGCCTGCAAAGCCTGCGCGTGGTCGATGCCTCGATCATGCCGATCATCACCACCGGTAACCTGAATGCACCGACGATCATGATCGCCGAGAAAATCGC CGACAAGATCCGCGGTCGCCAGCCGCTGCCACGCAGCACTGCCGACTACTTCGTCGCAGGCGACAAGCCAGCGCGCGGCAAGCCGCTGCGCGAGATCAGC CACCAGGCCTGATCTGCCGACCAGGCGTCCTCCCGGGACGCCTTTCGTTGTGCATGCTCCAGTGTGGAATGCATTTCGCACTGGAGCACTGGCACGGTAG TTACAAGATTCTCGTTCCTCACGCTCCAGTGTGGGAATGCATTTCCCGACGCTCCGCGCCGCAATGGATGCGGAGCATGGGTACGAGCGCCCACTCGACT CAGACCCTTCTCCCGACAGACGCGAATTGCCACTACCCCTCCGCTCTGCCACAATCGCGAATGATTCTCTTTAGTTAGAACTTTCTCATCGAGGCCATTC
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| DNA Sequence for Gene |
>IV03_RS18035
GTGTCGTCAGTCCCAAGCACTCATAGCGAGATCGTTGGTGCGCTGTATCGCGATCATCGAGGCTGGCTGCTGGCCTGGCTCAGACGCAATGTCGCCTGTC CGCCACGTGCTCAGGATTTGAGTCAGGACACGTTCGTGCGCTTGCTGGGGCGCCATGAATTGCTTGCGCCCAGAGAACCGCGTGCGTTCCTGGCAACCGT CGCCAAAGGGTTGATGTTCGACCACTTCCGACGTGCTGCGCTGGAGCAGGCCTACCTCGGGGAATTGATGCAGATGCCCGAGGCCGAGCAGCCCTCTCCG GAAGAGCAGATGCTGATTCTGGAAGACCTCAAGGCCATCGACCGCATGCTCGGCACCCTGTCCAGCAAGGCGCGGGCAGCCTTTCTGTACAGTCGCCTCG ACGCGATGGGTCACGCTGAAATTGCCGAGCGACTGGGCGTTTCGGTCTCGCGGGTCAGGCAATACCTGGCTCAGGCCATGCGTCAGTGCTACGTGGCGCT CTACGGTGAGCCGACGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACACCAGACCGGTCTCTACCCAAGTGCTCGATGCGGCCATCGAGTGGCAACTGAATATGGACAGCAACGGCGGCAATGGCGCCGAGCTAGCGCGCTGGCT GGCCGCCGACGAAGAGCATGCCCGGGCCTGGAGCCAGTTGGGCATGGTCAATCAGCGCTTTGCTTTGCCCGCAGGTCCGGCACGCAAGGCATTGCAACAG TCACCGGGTGCCCTGCGACACAGTTTGCGCAAGCTCGGTGGCGGTCTGGCCGGAGTGTTCATGGCCTTGGGCCTGGCATTGTTCGTCGGCGACCGCTATC TGCCGATAGATTACTGGCTTGCCGACCAGCGCACCGCCACCGGTGAACAGCGCGACGTGCGTCTGGCGGACAACACGCTGATTCGCCTAAACACCCACAG CGCAATCGATGTGCGCTTCGATGCGCAGCAACGTCGGGTCATTCTGCAGGACGGTGAAATATTGGTGCAGACCGGCGATCATGACGACCCGCGGCCCTTC
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| Amino Acid Sequence |
>RNA polymerase sigma factor
MSSVPSTHSEIVGALYRDHRGWLLAWLRRNVACPPRAQDLSQDTFVRLLGRHELLAPREPRAFLATVAKGLMFDHFRRAALEQAYLGELMQMPEAEQPSP EEQMLILEDLKAIDRMLGTLSSKARAAFLYSRLDAMGHAEIAERLGVSVSRVRQYLAQAMRQCYVALYGEPT
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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