Pseudomonas syringae UB0390, IV03_RS18100
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae strain UB0390 contig9.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTGCGCGCAGAGAAGGGTTTCATTATCGTCGGTCAGGACACCGATGGCTCAATGACGCCTGACGACCTGAACATGGGCTGGTGTGTCGGCCGTACCAAGC CGTTCTCCTGGATCGGCTGGCGCGGCATGAATCGCGAAGACTGCGTACGCGAACAGCGCAAGCAACTGGTCGGCCTCAAGCCGGTGGACCCTGCCAAATG GCTGCCGGAAGGCGCGCAACTGGTCTTCGACACCAAACAGACGATCCCGATGAGCATGGTGGGCCACGTGACCTCCAGTTACGCGCACAACTCGCTGGGC TATTCGTTCGCGATGGGCGTGGTCAAAGGCGGCCTGGCGCGTATGGGCGAGCGGGTATTCGCGCCTCTGGCCGATGGCAGCGTGATCGAAGCCGAGATCG TTTCTTCGGTGTTCTTCGATCCGAAGGGCGAGCGGCAGAACGTCGAGTAGTCCGCGGTGAGCCGATCATCCGCAGCACACAGAATTCAAGCAGGTGAATC
|
|
| DNA Sequence for Gene |
>IV03_RS18100
ATGAGCACAGCCAACGTTTACCAGCAGCGCCCGACCACCGACGTCAAAGCCGAGTCGCCGCTGTTCCATGCAAACCTCGACAGCCTGATTGGCAAGGGGC GCGCCAGCCCGGGGGTTTTCCTGCGCGAGAAAAAGCTGCTGGGGCATCTGACGATTCGTGGCAATGCCCACGATCCGGCCTTCGCCGCTGGCGTACACAA GGCGCTGGGCATGGAGTTGCCCGCCGCGCTGATGCTGGTCATCAGCGGCGAAAGCTCGCTGCAGTGGCTGGGCCCGGACGAGTGGCTGCTGATCGTGCCA AGCGGCGAAGAGTTCGCTGCAGAACAGCGACTGCGGGCCGAACTGAGCGGACAACACATCGCTATCGTCAATGTCAGCGGCGGGCAATCGATCCTTGAAC TGAGCGGGCCGAAGGTGCGCCAGGTACTGATGAAGTCCACCAGCTACGACGTGCACCCGGACAACTTCCCGGTGGGCAAGGCAGTCGGCACCGTGTTCGC CAAGTCGCAACTGGTAATCCGCCGGACCGGTGAAGAAACCTGGGAGCTGCTGGTCCGCCGCAGCTTCTCGGATTACTGGTGGTTGTGGTTGCAGGATGCG AGTGGCGAGTACGGGCTGAGCGTTCAAGCGTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
AGCGCCGGGGACCGGGGCTGAAACCGCAGCGGCAGTCTCAATGAAGACTCCTGCGGGAGCATTGGCACGATAGCCGAAACGGTGACTATCGTCCCCACGC TCCGCGTGGGAATGCAGTTCCGGACGCTCTGCGTCCTGCTTGAGCAAGCTGGCTGACACTGTCAGTCAGATTTGCGGATAACGAATACTCTGGAGCATTC ATTTAATGAGCCGCGCGCCCGACACATGGATTTTGACCGCCGACTGCCCCAGCATGCTCGGCACGGTAGACGCAGTGACGCGCTTTCTGTTCGAGCAGGG TTGCTACGTCACAGAGCACCACTCCTTCGATGACCGTCTCTCGGGACGCTTCTTCATCCGTGTGGAATTTCGTCAGCCCGAGGCTTTCGACGAACACGCG TTCAGGGCCGGTCTGAGTGAGCGCGGTGAAACGTTCGGCATGATCTTCGAACTCACGGCGCCCAACTACCGGCCAAAAGTAGTGATCATGGTCTCGAAAG
|
|
| Amino Acid Sequence |
>sarcosine oxidase subunit gamma
MSTANVYQQRPTTDVKAESPLFHANLDSLIGKGRASPGVFLREKKLLGHLTIRGNAHDPAFAAGVHKALGMELPAALMLVISGESSLQWLGPDEWLLIVP SGEEFAAEQRLRAELSGQHIAIVNVSGGQSILELSGPKVRQVLMKSTSYDVHPDNFPVGKAVGTVFAKSQLVIRRTGEETWELLVRRSFSDYWWLWLQDA SGEYGLSVQA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|