Pseudomonas syringae UB0390, IV03_RS18230 (relA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae strain UB0390 contig8.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGGTCGAGCGTGCAGCCGTCAACGCAATGAGTAATGATCTGCACAACGTGCAGTTTTTTCAGGCGGATCTTTCCCAGCCGCTGGCACATGCCGACTGGGC GGCAGAAGGGTTTTCTGCGGTACTCTTGGACCCGCCGCGTGACGGAGCCTTTGAAGTGGTCCGCCAGATCAGCAAGACGGGGGCCCGGCGACTGCTCTAT GTTTCATGTAATCCGGCAACTTTGGCTCGTGACGCGGTCGAACTGATCCGTCAGGGCTACCGATTAAAACGTGCCGGAATCCTCGATATGTTTCCGCAGA CGGCGCATGTCGAGGCGATGGCTTTATTTGAAATGAGTAAGTGAGCAGCGTTCACTGGAACGAGGTCGTTGCTGACAGGGAATCTCATTTAATCCGACTG GCCCGCGAATGCCGGTCCTTGCTTGCCCGGCAAGTGGCATTCGCTCAGAAGGCTGGCGACTGATGGCGCTATTCATCGCGCCGTAGGGAAGGTAAGCAGC
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| DNA Sequence for Gene |
>IV03_RS18230
|relA
ATGGTACAGGTGAGAGCGAACCAGCCGATAAACACAGACGGCAGTATCAATCTCGACGCGTGGCTCGATCATATTGTCAGCGTCGACCTGGTCCTGGACC GGGAAGTCATGAAAAAGGCCTGTGAATTTGCCCGGGAAGCCGAGCAGACCGACAAGGCCCACAAGAATCATTGGGCAGAGGGCACCTCCAGTTTTCAGAC CGGTCTGGAAATCGCGGAGATCCTGGCTGACCTCAAGCTGGATCAGGACTCGCTGATCGCTGCGGTCATTTACCGTGGCGTGCGTGAAGGTCTCATTGCG CTGCCGGAAGTCGAGCAGCGCTTTGGCGCAACGGTCGCCAAACTCATCGACGGCGTGCTGCGCATGGCCGCGATCAGCGCCAGTCTCAGCCCTCGTCAGT CACTGGTACTCGGCAGCCAGGCGCAGGTCGAAAACCTGCGCAAGATGCTGGTGGCGATGGTCGACGACGTGCGTGTTGCGCTGATCAAGCTGGCCGAACG TACCTGCGCAATTCGTGCGGTGAAGAACGCCGACGACGAAAAACGCAACCGTGTCGCCCGCGAAGTCTTCGACATCTATGCACCGCTGGCCCACCGTCTG GGCATCGGTCACATCAAGTGGGAGCTGGAAGACCTGTCCTTCCGCTACCTGGAGCCCGATCAATACAAGCAGATCGCCAAGCTGTTGCACGAGCGCAGGC TGGACCGCGAGCGCTTCATCAGCGACGTCATGTCCCAGCTCGACAACGAGCTGCAGGCCACCGGCGTGACCGCCGACATCAGCGGGCGTGCCAAGCATAT CTACTCCATCTGGCGCAAAATGCAGCGCAAGGGCCTGGCGTTCAGCCAGATCTATGACGTGCGTGCGCTGCGTGTGCTGGTCCCGGAAATGCGCGACTGC TACACCGCGCTGGGTATCGTGCACACCTTGTGGCGGCATATTCCCAAAGAATTCGACGATTACATCGCCAACCCCAAGGAAAATGGTTATCGCTCGCTGC ACACTGCCGTGATCGGGCCGGAAGGCAAGGTGCTGGAAGTGCAGATCCGCACCCACGCCATGCATGAAGAGGCCGAGCTGGGCGTATGTGCGCACTGGCG CTATAAAGGCACCGACGTCAAATCCGGCTCCAATCATTACGAAGAGAAGATTTCCTGGCTGCGTCAGGTGCTCGAATGGCATGAAGAGCTGGGCGACATC GGCGGCCTTGCAGACCAGCTGCGAGTCGATATCGAGCCTGACCGCGTCTACGTCTTCACCCCGGACGGCCACGCCATCGACCTGCCCAAGGGCGCGACAC CGCTGGACTTCGCCTATCGGGTGCACACCGAAATCGGCCATAACTGCCGGGGTGCGAAGATCAATGGCCGCATCGTCCCGCTCAACTACAGCCTGCAGAC CGGCGAGCAGGTCGAGATCATCACCAGCAAGCACGGTACGCCGAGCCGTGACTGGCTGAACTCGAACCTGGGGTACATCACCACCTCGCGCGCGCGAGCC AAGATCGTTCACTGGTTCAAGTTGCAGGCCCGTGACCAGAACGTCGCCGCCGGCAGAACCCTGATCGAACGCGAACTGGCGCGCCTGGCATTGCCGCAGG TCGACTTCGACAAGCTGGCGGACAAGGCCAATCACAAGACGGCCGACGACATGTTTGCGGCCCTGGGTGCAGGCGATCTGCGTCTGGCTCAGTTGGTCAA TCTGGCTCAGCAGCAGGTCGAGCCTGATCGCGTCAATGAACAGCTGGAACTGATCCCGCGCAAGGCCACCGGCTACAAGCCCGGCAAGCGTGGCGATATT CAGATTCAGGGCGTCGGCAACCTGATGACGCAGATGGCCGGCTGCTGCCAGCCACTGCCGGGCGATGCCATCGTCGGTTACATCACTCAGGGTCGTGGCG TCAGTATTCACCGTCAGGATTGCGCTTCAGTGCTGCAACTGGGCGGTCGCGAGCCCGAGCGGATCATTCAGGTCAGTTGGGGGCCGGTGCCGGTACTCAC TTATCCGGTGGACATCATCATTCGCGCCTACGACCGTTCCGGCTTGCTGCGAGACGTCACCCAGGTGCTGCTCAACGAGCGGATCAACGTGCTGGCGGTC AATACCCGGTCGAACAAGGAAGACAACACAGCGCTCATGTCCCTGACCATCGAAATTCCGGGTCTGGACGCGCTGGGGCGGTTGCTGGGGCGTATTTCCC AGTTGCCGAACATCATTGAAACGCGCAGGAACAGGACGCCATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGTCGCCTGCGCTCACAGGGAGCCCCATGTATACAGTTCAAGACCTGCTGACCCTCATGGCCCGGCTGCGTGATCCGCAGTTCGGCTGCCCGTGGGACC TGAAGCAGACCTACGCCAGCATTGTGCCGCACACGCTGGAAGAGGCCTATGAAGTGGCTGATGCCATCGAACAGGGTGATCTCGACCATCTGAAGGGGGA GCTGGGTGACCTGCTGTTTCAGGTGGTCTTCTATGCCCAACTGGCCCGGGAAGAAGGCCGGTTTGAATTCGACGATGTCATCGACGGTATTACCCGCAAG TTGCTGCGTCGCCATCCGCACGTGTTTCCGACTGGCGAGCTGCATGCACCGGCAGAAACGCCGCGCCTGACCGACGAGCAGGTCAACCGTCGTTGGGACG AAATCAAGGCCGAGGAGCGTGCCGAGAAGGCCGGTGCACCCGAGCAGTTGTCGCTGCTCGACGATGTGCCCCGGGCCTTGCCCGCATTGAGTCGTGCAGC
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| Amino Acid Sequence |
>(p)ppGpp synthetase
MVQVRANQPINTDGSINLDAWLDHIVSVDLVLDREVMKKACEFAREAEQTDKAHKNHWAEGTSSFQTGLEIAEILADLKLDQDSLIAAVIYRGVREGLIA LPEVEQRFGATVAKLIDGVLRMAAISASLSPRQSLVLGSQAQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADDEKRNRVAREVFDIYAPLAHRL GIGHIKWELEDLSFRYLEPDQYKQIAKLLHERRLDRERFISDVMSQLDNELQATGVTADISGRAKHIYSIWRKMQRKGLAFSQIYDVRALRVLVPEMRDC YTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHAMHEEAELGVCAHWRYKGTDVKSGSNHYEEKISWLRQVLEWHEELGDI GGLADQLRVDIEPDRVYVFTPDGHAIDLPKGATPLDFAYRVHTEIGHNCRGAKINGRIVPLNYSLQTGEQVEIITSKHGTPSRDWLNSNLGYITTSRARA KIVHWFKLQARDQNVAAGRTLIERELARLALPQVDFDKLADKANHKTADDMFAALGAGDLRLAQLVNLAQQQVEPDRVNEQLELIPRKATGYKPGKRGDI QIQGVGNLMTQMAGCCQPLPGDAIVGYITQGRGVSIHRQDCASVLQLGGREPERIIQVSWGPVPVLTYPVDIIIRAYDRSGLLRDVTQVLLNERINVLAV NTRSNKEDNTALMSLTIEIPGLDALGRLLGRISQLPNIIETRRNRTP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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