Pseudomonas syringae UB0390, IV03_RS19920 (fliN)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae strain UB0390 contig5.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTACATCAACTCGGAAGTGAACCCGGCCATGGCCAACATCGTCGGGCCGAGCGAGGCTGTCGTGATTTCCACCTTCCACATCGAGCTCGATGGCGGTGGC GGCGATCTGCACGTGACCATGCCGTACTCGATGATTGAGCCGATTCGCGAAATGCTTGATGCCGGTTTCCAGTCCGATCTGGACGATCAGGACGAGCGCT GGGTCAACGCGCTCAAGGAAGACGTGCTGGATGTCAACGTGCCGCTCACCACGACCATCGCCCAGCGCCAGTTGCCGTTGCGGGACATCCTGCACATGCG TCCTGGTGATGTGATCCCGGTGGAGCTGAGCGACTCGCTGGTCTTGCGTGCCAATGGCGTACCTTCGTTCAAGGTCAAGCTTGGCTCGCACAAGGGCAAG ATGGCCCTGCAAGTAATCGAACCCATAGCGCGACGCTGACCTTTCTGGTCTGCGTCGGAAATTGTTGCGTAACTGAAATACTGCGTGCAGAGGACAACCG
|
|
| DNA Sequence for Gene |
>IV03_RS19920
|fliN
ATGGCTGATGAAAACGATATGACGTCTGCTGAAGACCAGGCATTGGCCGATGAATGGGCTGCTGCATTGGGCGAAGCTGGCGACAGTCAGGCTGATATTG ATGCGTTGCTGGCTGCGGACGCCGGGAACTCGGGTAGCCGGATGGCCATGGAAGAGTTTGGCAGCGTGCCGAAAAACAGCGGGCCGGTTTCTCTGGATGG TCCCAACCTGGATGTGATTCTCGACATTCCGGTGTCGATCTCCATGGAAGTGGGCAGCACCGATATCAACATTCGCAACCTGTTGCAGCTCAACCAGGGC TCGGTGATCGAGCTGGATCGTCTGGCGGGCGAACCGCTGGATGTGCTGGTCAACGGCACGTTGATCGCGCATGGCGAAGTGGTAGTGGTCAACGAAAAGT TCGGGATCCGTCTGACCGACGTGATCAGCCCGAGCGAACGCATCAAGAAGCTGCGCTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GTGAGGCGCTGGCTGAGTGTTCTGCTGACTTTGCCATCGCTGGCCTGGGCCGCCGAACCCGCCGCCCAGGCGGCGCCTGCGCAAGTGGCCAACACGGTCT CAGGCGGTATGGGCGGGCAGGTGGTGCAGCTATTGTTCGGTCTGATCCTGGTGATTGGCCTGATTTTCGTGCTCGCCTGGCTGATGCGCCGGGTGCAGCG CGTCGGGCCGAACAGTAATCAGGTGATCGAGCTGGTGAGTTCGCGTGCGCTGGGGCCGCGTGATCGGCTGGTGCTGGTACAGATCGGTAATGAACAGGTG CTGCTGGGCATTACGCCCGGGCGAATCACGCCTCTGCATGTGCTCAAGGAGCCCGTACAGGTGCCGGTGCGCGAGCAGGCTACCCCTGAATTCGCTCAGC GCCTGATGGAGCTGATGGGCAAGGATAAGGACAAGAAGTAATGGGCGCCTTGCGTTTCCTGATACTGCTGTTGCTGGTCATGGTGACGCCTGCTGCGCTG
|
|
| Amino Acid Sequence |
>flagellar motor switch protein
MADENDMTSAEDQALADEWAAALGEAGDSQADIDALLAADAGNSGSRMAMEEFGSVPKNSGPVSLDGPNLDVILDIPVSISMEVGSTDINIRNLLQLNQG SVIELDRLAGEPLDVLVNGTLIAHGEVVVVNEKFGIRLTDVISPSERIKKLR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|