Pseudomonas syringae UB0390, IV03_RS19940

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas syringae strain UB0390 contig5.1, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GGCGTTTCAGATCGGCTTCATGATCTTCATTCCGTTCCTGATCATCGATCTGGTGGTGGCCAGTGTGCTGATGGCGATGGGTATGATGATGCTGTCGCCG CTGATCATTTCTCTGCCGTTCAAGATCATGCTGTTTGTGCTGGTGGACGGCTGGGCGCTGATTGTCGGCACCCTGGCTGGCAGTTTTGGTGGTGTATGAG CCGTTTTACTGAGGAGTCTGCCCGATGACGCCGGAAGTAGCCGTCGATCTGTTCCGCGAGGCACTGTGGCTGACCACTGTGCTGGTCGCGATTCTTGTAG TGCCGAGCCTGTTGTGCGGTCTGCTGGTGGCGATGTTTCAGGCGGCCACACAGATCAACGAACAGACCCTGAGCTTCCTGCCGCGGCTGCTGGTGATGCT CATCACCCTTATCGCCATCGGCCCGTGGCTGTTGAAAATATTCATGGAATACATGCTGTCGTTGTACACCAGTATTCCGACCCTGATCGGCTAGCGCCGC
DNA Sequence for Gene
>IV03_RS19940
ATGCAGCCGATGCTTGCGCTGACCGATACCCAGATCAGTACCTGGGTAGCCAGCTTCATGCTGCCGCTGTTTCGCATCATCGCGTTGCTGATGACCATGC CGATCATCGGCACCACGCTGGTCCCGCGTCGCGTGCGCATGTACCTCGCCGTGGCGATCACGGTGGTGGTCGCGCCTGCGCTTCCCGCCATGCCGCCCGT GCAGGCGCTCGACCTGAGCGCGCTGTTGCTGATCGGTGAGCAGATCATCATCGGCGCCGGGATGGGCCTTTCGCTGCAGCTGTTTTTCCATATCTTTGTC GTCGCGGGGCAGATTATCTCGACGCAGATGGGGATGGGCTTTGCGTCGATGGTCGACCCTACCAACGGCGTTTCCTCCGCCACCATCGGTCAGTTCTTCA CGATGCTGGTCACCCTGTTGTTTCTGGCCATGAATGGTCATCTGGTGGTGCTGGAAATTCTCGTCGAGAGCTTTACCACGATGCCGGTTGGCAGTGGTTT GCTGGTGAACAATTTCTGGGAGCTGGCCAACGGGCTGGGCTGGGTGCTGAGCTCCGGTCTGCGACTGGTATTGCCTGCGATCACCGCGCTGCTGATCATC AACATCGCCTTTGGCGTCATGACTCGCGCCGCACCGCAACTCAACATCTTCTCCATCGGCTTCCCGCTTACGCTGGTGTTGGGCATGGTCATTCTATGGA TGACCATGGGCGACATTCTCAATCAGTATCAACCGATCGCTACGCAGGGATTGCAGGCGTTGCGCGACATGGTGAGGGCTCGTTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
ATGGCAGAAAACGAGAATGGCCAGGACAAGACAGAAGACCCCACGGAAAAAAAGGTCAAGGACGCACGGGCTGACGGCCAGATCGCGCGCTCCAAGGAGC TGACCACGCTGGTGGTGATGCTGATGGGGGCGGGCGGGTTACTGATGTTCGGCTCTGATATCGCCCTGATGATGTCCGAGCTGATGCGTGACAATTTCAC GATATCCCGTGAAACCCTGATGGATCAGTCCTATATGGGCAAGGCGCTGCTCAGTTCCGGTATGCACGCGCTGATAGTGGTCCTGCCGTTCCTGATCGCC ATGCTGGTTGCCGCACTGGTGGGGCCGATCATGCTCGGCGGCTGGCTGTTCGCAACCAAATCGTTGATGCCCAAGTTCAGCCGCATGAACCCGGCGGCAG GGCTCAAGCGCATGTTCTCGCCGCATGCGCTGGTTGAGTTGCTCAAGTCCTTCGGAAAATTCCTGATCATTCTGGCAGTGGCGCTGGTGGTTCTGAACAA
Amino Acid Sequence
>flagellar biosynthesis protein FliR
MQPMLALTDTQISTWVASFMLPLFRIIALLMTMPIIGTTLVPRRVRMYLAVAITVVVAPALPAMPPVQALDLSALLLIGEQIIIGAGMGLSLQLFFHIFV VAGQIISTQMGMGFASMVDPTNGVSSATIGQFFTMLVTLLFLAMNGHLVVLEILVESFTTMPVGSGLLVNNFWELANGLGWVLSSGLRLVLPAITALLII NIAFGVMTRAAPQLNIFSIGFPLTLVLGMVILWMTMGDILNQYQPIATQGLQALRDMVRAR
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site