Pseudomonas syringae UB0390, IV03_RS19965 (fliA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae strain UB0390 contig5.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTCAGCGAGATTGGCGACAACCTCGATGTGCTGGTGATCGATACGGCCGCCGGTATCGGCGAGTCGGTGGTCAGCTTCGTGCGCGCCGCTCAGGAAGTGC TGCTGGTAGTGTGCGACGAGCCCACGTCGATCACCGATGCCTACGCCCTGATCAAACTGCTCAATCGCGACTACGGCATGAACCGCTTCCGGGTGCTGGC CAACATGGCACAGAGCCCGCAGGAAGGGCGCAACCTGTTCGCCAAACTGACCAAAGTGACGGATCGTTTTCTCGATGTTGCGCTGCAGTATGTAGGTGCC GTGCCGTACGACGAATGCGTACGCAAGGCTGTACAGAAACAGCGCGCCGTTTACGAAGCATTCCCGCGTTCCAAATGTGCACTGGCCTTCAAGGCCATTG CCCAGAAGGTTGATACCTGGCCGTTGCCAGCCAACCCGCGGGGTCATCTCGAGTTCTTCGTTGAGCGACTCGTTCACCAGACCAGTGCAGGGCCTGTGCA
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| DNA Sequence for Gene |
>IV03_RS19965
|fliA
ATGACTGCGAGCGGCTACCAGATGTACAGCAAGGCGTCCCGTAATTCGCAATACGAGTTGATCGAGCGCTATGCGCCTTTGGTCAAGCGTATCGCTTATC ATCTGCTGGCGCGCCTGCCGGCCAGCGTACAGGTCGAGGATCTGATCCAGGCCGGCATGATCGGCCTGCTTGAAGTCTCCACCAAGTATGATTCCACCAA GGGTGCGAGTTTCGAGACCTATGCCGGTATTCGCATCCGTGGTGCGATGCTCGATGAAGTGCGCAAGGGTGACTGGGCGCCACGCTCGGTACACCGCAAT ACGCGCATGGTGAGTGACGCAATTCGGGCAATTGAAGCTAAAACAGGCCGTGACGCTAAAGATCACGAGGTTGCGGCCGAACTCCAGTTGAGTCTCGATG ATTACTACGGGATTTTGAATGACACCTTGGGCAGCCGCCTCTTCAGTTTCGACGACCTGCTGCAGGACGGCGATCATGAAGGGCTGCACGAGGATGGCGC AAGCGGTTCGCTTGAGCCGTCGCGCGACCTGGAAGACGAGCGCTTCCAGGCTGCGTTGGCCGATGCAATTGCCAATCTGCCAGAGCGCGAGCGTCTGGTG TTGGCGCTGTACTACGACGAAGAGCTGAACCTCAAGGAAATCGGAGAGGTTCTGGGGGTCAGCGAATCTCGGGTCAGTCAGTTACACAGCCAGTGCGCAG CTCGTTTGCGAGGGCGTTTGGGGGAGTGGCGAGCGCGTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CAGGCAATGTGCGGTCTATGGCCGCGCGTTGACTGCAAGCCGGCTGTGCAGAGCGTTACGTGGTAACAGGATGGACCCGTCATAAGCCTGTCAGGCATTG CCTTGATGGGCTTGTTTCTCAGGTCCTTGCCTGTTGTTGTGCCAAGCCCGTCGTCGTTTCGTACAGCCGGGGGTGTGCTGTGCCAGTATTGAGTGAACAG CGTGTTCAGGTGCTGAACGCGTTAAAGACTGCTTGGAGGTCGAATTGGACAAGAACATGAAAATCCTCATCGTTGATGACTTCTCAACGATGCGGCGGAT CATCAAGAACCTTTTGCGTGATCTGGGGTTTACCAACACATCGGAAGCGGATGATGGTCTGACCGCATTGCCGATGCTGCAGAGCGGTGCCTTTGACTTT CTGGTGACGGACTGGAACATGCCTGGCATGTCCGGTATCGATCTGCTGCGCGAAGTCCGCAAGGACGAACGCCTCAAGAGCCTTCCCGTGCTGATGGTCA
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| Amino Acid Sequence |
>RNA polymerase sigma 70
MTASGYQMYSKASRNSQYELIERYAPLVKRIAYHLLARLPASVQVEDLIQAGMIGLLEVSTKYDSTKGASFETYAGIRIRGAMLDEVRKGDWAPRSVHRN TRMVSDAIRAIEAKTGRDAKDHEVAAELQLSLDDYYGILNDTLGSRLFSFDDLLQDGDHEGLHEDGASGSLEPSRDLEDERFQAALADAIANLPERERLV LALYYDEELNLKEIGEVLGVSESRVSQLHSQCAARLRGRLGEWRAR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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