Pseudomonas syringae UB0390, IV03_RS20405
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae strain UB0390 contig4.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCCGCGCCGTTCGTCTGTATTAATTTACAGACCTTCGTCGCAAGCTTCTGCCTTGCCCGGCCAACCAGCCGGGCTTTCGGCAGTTACAGCTTCGCTGTTT TGCGTTTGCTTTATTGATTGACCCTGTCCAGGCCGCCGATGCGACTCGGATATTCAGTCAAGCACGTCCAGCCTGTTCACAGGCTACATCGGTCATGCCC ACTCGGGCAGCACATCGACCGATGACAAGACGAGTATGCCTTGATGACTTCGCAAGAAGCTCAGCCAAGGCAGCGTCTTCCGTGTCCCGGGCTCTGACCA CTCATGTGGGCAACGAAGCTTGTGGCCTTTTTGATCCACTCGCGGGATCAAGCCTTATTCCTTCCAGGCCAACAGCGTCCTTCGGATGCAAAGACGTGCC CGTTTATTGCCGACGTCTTCAAAAAGACGGCTGACAGGCTGACGGAACGCTCGTAGAGTCATCCGATACTTTTGCACCACGCTTGAATGATGAGAACGCC
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| DNA Sequence for Gene |
>IV03_RS20405
ATGGCCGGGCTGATTCCCCAGAGCTTTATCGACGACCTTCTGAACCGCACCGATATTGTCGATGTTGTCAGTTCGCGCGTGCAGCTCAAGAAAGCCGGGA AGAATTACACCGCGTGCTGCCCGTTCCACAAAGAGAAAACCCCCTCTTTCAGCGTCAGCCCGGACAAGCAGTTCTATTACTGCTTCGGGTGCGGCGCAGG TGGCAACGCGCTCGGCTTCATCATGGACCACGACAACCTGGACTTCCCCCAGGCGGTCGAGGACCTGGCCAAGGCCGCCGGCATGGAAGTGCCTCGCGAA CAGAGCGTAAAAGGCCAGAAGCCCCGGCAACCGACCGATTCCCCGCTCTACCCGCTGTTGACCGCCGCTGCCGAGTTCTACCGTCAGGCCCTGAAAAGCC ACCCGTCACGCAAGGCTGCGGTGGATTACCTCAAGGGCCGCGGACTGTCCGGCGAAATTGCCAGGGACTTCGGCCTGGGCTTCGCCCCTCCCGGCTGGGA CAACCTGTACAAACACCTGAGCAGCGACTCATTGCAGCAAAAGGTGATGATCGATGCCGGCCTGCTGATCGAGAACGCCGAAACCGGTAAACGCTACGAC CGCTTCCGCGACCGGGTTATGTTTCCGATCCGTGATTCACGTGGGCGCGTCATTGCCTTTGGCGGCCGCGTACTGGGCGATGACAAACCCAAGTACCTGA ACTCCCCGGAAACACCGGTTTTCCACAAGGGTCAGGAGCTGTACGGCCTGTTCGAGGCGCGCAAATTCAATCGCAACCTCGATGAAATCATTGTTGTTGA AGGCTACATGGACGTCATCGCCCTCGCCCAGCAAGGCTTGCGCAATGCCGTGGCCACGCTGGGTACAGCGACCAGCGAAGAGCACTTGAAGCGCCTGTTC AGGGTCGTGCCCAACGTGTTGTTCTGCTTCGACGGCGATCAGGCCGGGCGCAACGCTGCATGGCGTGCACTGGAAGCGACCCTGTCGAACCTGCAGGACG GACGGCGGGCGCGCTTTCTGTTTCTTCCCGAAGGCGAAGACCCGGACACGCTGGTACGCTCAGAAGGCACCGACGCGTTCAAGGCACGCATCAATCAGCA CGCGCAGCCGCTGGCCGATTATTTTTTCGAACAACTGACCAAAGAGTCCGACCCGCGCTCGCTGGAAGGCAAGGCGCACATGGCCACCCTGGCAGCGCCA CTGATCGACAAGGTGCCCGGCGCGAACCTGCGTATTCTGATGCGTCAGCGCCTGAGCGAAATTACCGGACTGACCGGAGAAGCCGTCAGTCAGCTGGTGC AGAGCGCGCCGGCAGAGGCGCCACCGAGTTACGACCCGTATGTCGACTATGATGCCATGCCTGATTTTGCCGATTACCAGCCACAAGGCGGTTATGAGCC TCAGCAGGAATGGACGCAGAAGAAAACCGGCGGTCAGAATCAAAAAAAATGGGACAACAAATCCTGGGGTAAAAAAGGCAAGCGCCAGGACTTTGAACCT CGAACGCCGCGTGTGCCTACCGCCGTCGAACCGCCCATGCAGGCTGCGCTGAGAACCTTGCTGCATCACCCCGAATTGGCGGAAAAGGTCGAAAATGCCA GCCATTTCGCTGCAGAAGACCAATCAAACGCACAACTGCTGGTCGCTCTTATCGAGGCCCGGCAAAAGAATCCGAACCTTCGGTCGTTACAGTTGATAGC GCGATGGCATGGCACCGAACAGGGCCGCTTGCTGCGCGCACTGGCAGAAAAGGAATGGCTGATTGAGGCCGATAACCTTGAACAACAGTTTTTCGACACT ATAACTAGCTTATCCGCTCGCCAGCGCGAGCGCAGTCTGGAACATCTGATCAGCAAGGCTCGGCAGACCGAGTTGAGCGCAGAAGAGAAAATTCAGCTTA GGGAACTGCTAAATCGCAATGTTCCCGCACAAACCCCGACCTCAACTGGCGCGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGTCATAGCTCGGGTATAATCCTCGGCTTGTTTTTTGCCCGCCAAGACCTTCAGTGGATAGGGTGTTATGTCCGGAAAAGCGCAACAGCAATCTCGTATC AAAGAGTTGATCACCCTGGGTCGTGAGCAGAAGTATCTGACTTACGCAGAGGTCAACGACCACTTGCCCGAGGATATTTCAGATCCCGAGCAGGTGGAAG ACATCATCCGCATGATCAACGACATGGGGATCCCGGTACACGAGAGTGCTCCGGATGCGGACGCCTTGATGCTGGCCGACGCCGATACCGATGAGGCAGC CGCAGAAGAAGCGGCTGCAGCGTTGGCAGCGGTCGAGACCGACATCGGTCGTACCACCGATCCTGTTCGTATGTACATGCGGGAAATGGGCACCGTTGAA CTTCTGACCCGTGAAGGCGAAATCGAAATCGCCAAACGTATCGAAGAAGGCATCCGTGAAGTGATGGGCGCAATTGCGCACTTCCCAGGCACGGTTGACC
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| Amino Acid Sequence |
>DNA primase
MAGLIPQSFIDDLLNRTDIVDVVSSRVQLKKAGKNYTACCPFHKEKTPSFSVSPDKQFYYCFGCGAGGNALGFIMDHDNLDFPQAVEDLAKAAGMEVPRE QSVKGQKPRQPTDSPLYPLLTAAAEFYRQALKSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLYKHLSSDSLQQKVMIDAGLLIENAETGKRYD RFRDRVMFPIRDSRGRVIAFGGRVLGDDKPKYLNSPETPVFHKGQELYGLFEARKFNRNLDEIIVVEGYMDVIALAQQGLRNAVATLGTATSEEHLKRLF RVVPNVLFCFDGDQAGRNAAWRALEATLSNLQDGRRARFLFLPEGEDPDTLVRSEGTDAFKARINQHAQPLADYFFEQLTKESDPRSLEGKAHMATLAAP LIDKVPGANLRILMRQRLSEITGLTGEAVSQLVQSAPAEAPPSYDPYVDYDAMPDFADYQPQGGYEPQQEWTQKKTGGQNQKKWDNKSWGKKGKRQDFEP RTPRVPTAVEPPMQAALRTLLHHPELAEKVENASHFAAEDQSNAQLLVALIEARQKNPNLRSLQLIARWHGTEQGRLLRALAEKEWLIEADNLEQQFFDT ITSLSARQRERSLEHLISKARQTELSAEEKIQLRELLNRNVPAQTPTSTGA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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