Pseudomonas syringae UB0390, IV03_RS21380
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae strain UB0390 contig3.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGGCGTACAGCGCGTCGAGAATCTCCTGGCCGGCTTCATCCTGTTGCAGGTACAGCGCAATGATATAGATGCGCCGGGTGGCCGAGGCGATCCTTTCCAG CAGGCAGCGTCGATAGTCGGCGGCAGAAGGAACAATGGAGATTGCATCGCTCTGCACGGCAAAACCGCGAAGTGCTGCCAGGGTCGAGCGTCGGAAAGTG GACTGCATAGGCCTCTCGATGGGAAAACCAATAGCCTGTGAGCTTACACGACAGTCGGCCTTCTGTGGCTGTCGCCAACCTGTTTCAAGGCATTGCGGAA CGCTACGGGCCGCCATGCGCGCTGATTGCTCACGCTGCAGCGCGGGAACGACGCGTTTGGCGTTGCGCGGTTATCACTTTTCATGCGTAAACAAATGATA AGCATTACCAGTAACATCTGATATCATTTCGCATCCCCCGATCGGTGATGTCCAGGACGGTTGCTTCCGATCTCGTTCAACTTGTCTTCAGGACCTATTG
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| DNA Sequence for Gene |
>IV03_RS21380
ATGAACTCCCCATCGTTCCCGATGCGCCTTACGTTGCTCGCGTTTTGCTGTTCCATTGGATCTCCGGCCTGGGCCGCTGCAGAGGCTGCTACTCGGCAGG ACGGCCCTGTGGTGCTGGGCGAGACCGACATCAGTGCCGACAAGGCCGACCCGCATGCGCTGCCGCCGGTTTATGCCGGCGGACAGGTGGCGCGCGGCGG GCAACTGGGCGTTCTGGGCAATGCCGACATCATGGATGTACCGTTCACCATGACCAGTTACACCGAACAGTTGATCGAGGACCAGCAGGCCGAAACCGTC GGCGACGTACTGCTCAACGATGCATCGGTGCGTCAGTCGAGTGGTTATGCCAACGCTTCGCATATCTTCGTCATTCGTGGCCTCAAGCTGACCACCGATG ATATTTCCTACAACGGCCTTTACGGCGTACTGCCACGCCAGATCATATCGACCGATGCGCTGGAGCGCGTTGAAGTGTTCAAGGGCCCCAACGCCTTTAT CAACGGCGTGACCCCGACCGGTTCCGGGATTGGCGGCGGCGTGAACCTGCAGCCCAAGCGCGCGCAGGACACACCGACGCGTCGTTTTACCACCGACATC AGCACCGACGGTCGGATCGGCGAGCATCTCGATCTGGGGCAGCGCTTTGGCGAAGGCAATCGCTTCGGCGCGCGTCTCAACCTGTCGCAGCGCGAAGGCG AGACGGGTGTCGAGGACGAAGAGCAGCGCAGCAAGCTGTTCGCGCTGGGGCTTGATTACCGAGGTGACAACTTCCGTCTGTCCGGCGATTTTGCCTACCA GAAGCAGCGCATCAACCAGAGCCGCAACACGGTGTTTGTCGACAGCGCCCTGACCAGCGTGCCGCATGCCCCGGACTCGGACACCAATTACGCGCCGAAC TGGACCTGGACGGAAACCGAAGACACCTTCGGTATGAGCCGCGCCGAGTACGACCTCAACGAAGACTGGACGCTGTACGCCGCAGTGGGCGCCAAGCACA CCCGCGAGGTCGGCATATACGGCTCGCCAACCGTCCACGATGCCGCAGGCAACACCACGGCCGCACCGTCCTTTATCCCGCACGACGAAGACAACAAGAC CGCCATGGCCGGCATCAACGGCAAGCTACAGACCGGTGCGGTCAGTCACAAGGTCAACGTCGGCCTGTCCGGTATCTGGACCGAACAGCGCAGTGCGTAT CTGTTCGGCGGCACCTCCAGCAACAACCTTTACGACCCTGTCTCCCAGGAGCGCCCGGCACTCGACAGTTTCACCGCAGGCGATCTGAATGATCCCGGCA TTGTCGGCAAGAGCCGCATGCGCAGCGTCGCGTTCTCCGACACATTGGGCTTTTTCGATGATCGTCTGTTGCTGACTGCAGGCCTGCGTCGCCAGCAACT GCGCGTTCAGGGGTATGAATACGGCAGCGGCCCGCGCAATGCGCTGTACGACGAAGCCATCACCACGCCGGTCTATGGGGTGGTATTCAAGCCTTGGCAA TATGTGTCGTTCTACGCCAACCGCATCGAAGGTCTGGCGCAAGGTCCAACGGCTCCGGATACAGTCACCATCAACCCTGGCGAAGTTTTTGCGCCGTCGC GTTCGAAACAGGTGGAGGCGGGCGTCAAGCTGGACATGGGCACGTTCGGCGCGAGCCTGGGCGTGTACCGCATCGAGCAACCGGCTGACGGCTACCAGGT TCTGGAAGGCACCGAGTCGCGTTATGTTCGTGATGGTCAACAGCGCAACCGCGGCGTGGAGATGAACGTGTTTGGCGAGCCTGTCAACGGCCTGCGTCTG CTGGCCGGTCTGACCCTGATGGATACCGAGGTGAGCGGCACGTCCGGCGGCAGCAACGACGGCAATCGCGCCGTGGGTGTGCCGACCTTCCAGCTCAACG CGGGTGCCGATTGGGATATCCCGGGGATCGAAGGTGCGGCCATCAATGCGCGCATGCTGCGCACCGGTGGGCAATATGTCGATGCTGCCAACAACCAGAG CATCCCGACCTGGAACCGCTTCGACCTGGGCGCACGCTATACCTTCAACGTTGCGCAGAAGGACTTGACCCTGCGTGCCAATGTCGAGAACCTGATGAAC AAGGATTACTGGGCATCAGCCAATGGCGGTTACCTGACTCAGGGCGAGCCTCGCACCCTCAAGCTGTCGGGCACTATCGACTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTGACTGGCCGCATCGCAGGATGCGGCCAGCCGCTGGATCAGTAGCCGTTACGCTTCAGAATCGTTTCAATGCTTTCTTTCGCTGGCCGCTCGTAGAACT TCAGCAGTTCAGCGGTGCGGTTGGTGAAGAAGCCATCCGCGCCATCATGGCTGATCCGCTTGAAGTCCTCTGCGTCGTCCACGGTGTACGGGTGGATCAC CATGCCTTTCTCGTGGGTCAGGTTGTTCATCCAGGGTTTGACCAGGTCCATGTAGCTCTGGTCGCCACCCTTGGCCAGTTGCGACGAAGGGCCGGTGCCG ATGGCGCCGTGGGCCTTGGCCCAGTCAATCCACTGCTCGAACTCCTGCGGTGATTTGACTTCCTGTGTCGCGTAATAGCTGGCCTTGTCCTTGGCTCCGG AGTCCTTGAACGCGACGCTGGACTTGGGCTCTATCGAGCCTTCGCCAATCCACAACAGCATGACCTTGGGCACTTTCGGCATTTCTCTCTGCAGCAGTTC
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| Amino Acid Sequence |
>TonB-dependent receptor
MNSPSFPMRLTLLAFCCSIGSPAWAAAEAATRQDGPVVLGETDISADKADPHALPPVYAGGQVARGGQLGVLGNADIMDVPFTMTSYTEQLIEDQQAETV GDVLLNDASVRQSSGYANASHIFVIRGLKLTTDDISYNGLYGVLPRQIISTDALERVEVFKGPNAFINGVTPTGSGIGGGVNLQPKRAQDTPTRRFTTDI STDGRIGEHLDLGQRFGEGNRFGARLNLSQREGETGVEDEEQRSKLFALGLDYRGDNFRLSGDFAYQKQRINQSRNTVFVDSALTSVPHAPDSDTNYAPN WTWTETEDTFGMSRAEYDLNEDWTLYAAVGAKHTREVGIYGSPTVHDAAGNTTAAPSFIPHDEDNKTAMAGINGKLQTGAVSHKVNVGLSGIWTEQRSAY LFGGTSSNNLYDPVSQERPALDSFTAGDLNDPGIVGKSRMRSVAFSDTLGFFDDRLLLTAGLRRQQLRVQGYEYGSGPRNALYDEAITTPVYGVVFKPWQ YVSFYANRIEGLAQGPTAPDTVTINPGEVFAPSRSKQVEAGVKLDMGTFGASLGVYRIEQPADGYQVLEGTESRYVRDGQQRNRGVEMNVFGEPVNGLRL LAGLTLMDTEVSGTSGGSNDGNRAVGVPTFQLNAGADWDIPGIEGAAINARMLRTGGQYVDAANNQSIPTWNRFDLGARYTFNVAQKDLTLRANVENLMN KDYWASANGGYLTQGEPRTLKLSGTIDF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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