Pseudomonas syringae UB0390, IV03_RS21675

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas syringae strain UB0390 contig2.1, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GTGGAGACTTCCGCGCCCAGCGCCTTGAGACGTTCGACCAGCATCGCGCTGACGGTCTTCAGCCCGGGTGCCTGGCCGGTGCCTGTATCGATATCGACCA GTTGCCGGACAGTGTCGAGGTAGGCCGGCTGTTCGGCCTGGGCTTTTTTCAGCAACTGATCGGGTGACAGCTCGGCGGCGTTCGCAGCCATGGAAAACAG GCCCATGGACACCAGGGAAAGTCCGATTGCGGCAGTGATGGGGAAGCGTCGTGAATGCATGCTGGTTCCTTCAGATGATCGCGAGTTGAACAGCATCTTT ACCCCAATGCGCCGCTCGACGCCACAGGCGAGGCTTGTGCAGAAAATATGTATGAGAATGTAACTGATAGTGATTAGCGTTTAGTAAAGCGCAAAAAAGT TGTTAGTCTCGCCCCGCCGCTGCCCGTCACCACTGTTGCGACAGGCACACCATCTGCGACATGTACCGCCACGTCCTCAGCCCTTGCAGGAATGACCCTA
DNA Sequence for Gene
>IV03_RS21675
ATGCTTCGTCCGTTTCTCCCTTCGCTGACCGGTATTTTAGTCCTCGGGCTTTCAGCCACCGCTGTGGCAGCCCCCGTTCAACTCGATCTGCCCGCACAGC CGCTCTCCAGGTCGCTGACACAACTGAGTCAGGCAAGCGGCCTGCAGATATCAGTTGATGACTCCCTGATTGCAAGCAAGCAGGCCCCGGCTGTCAGAGG CAGCCTGGAACCGGCTCAGGCATTGAGCCGACTGCTGCTGGGCAGCGGCCTTGATGCGCAGGTGCAGGGCAATGCCGCGAAGGTGTTCCAGCCAGCCAGC AATGGCCCCATGACGCTGGGCAACGTGGATATCAGCGCTCAAACGGGAATCGCTGGAATGGCGACTACGGAAGGCAGCGGCTCGTATACGACCGGATCGA TGAACAGCGCGACCAAACTGCCCCTCTCGATTCGCGAGACGCCGCAGTCGGTGAGCGTGATCACCCGCCAGCGCATTGAAGATCAAGGCATGAACGACCT CAATGATGTGGTCAAATATGCACCCGGCGTCACACTGCGCAAGTTCGGCTCGGACCGCCAGCAGTTTCTGGCGCGCGGCTTTGCCATCGATAACCTGATG TATGACGGTCTGCCGACAATCGTCAGCACCTTTACACTGGACACCATTTCCGGTGCCGATCTGGCGCTGTACGACCGCGTCGAGGTGGTTCGTGGGGCGA CGGGGCTGATGACCGGCGCGGGCAGTCCATCGGCGACGCTGAACCTGATCCGCAAGCGTCCTACCGCGACTCCGCAAGTCAGCGTGACTGCCAGTGCAGG GAGTTGGGACCGTTACCGTACCGAAGTGGACGCGTCGAACCGGCTCAACGATTCCGGTACGTTGCGCGGCCGCGTGGTGACGGCCTATGAAACGGGCAAC AGTTTTGTCGATGAGCGCGATAAAGAGCGCCAGACGTTCTATGGCGTACTGGAAGCCGATCTCAGCGATTCGACCACGTGGACCATCGGAGCCTCGAAAC AGCGCGATGACGCGACCTCCGACTGGGGCAGCCTGCCGTCCGGTCCGAACGGCGAGAATCTTGGCCTGCCGCGCTCCACGTTCCTGAGCAACGACTGGGC CTACTGGGACAGGCAGAACGTCAGCCTCTTCACTGACCTGACCCATCATTTCGACAACGGCTGGAGCAGCAAGCTGGCAGCGACCAGAATCTGGGCGGAG TCCGACATGTACTCCAACTACCTGACCGCCAACGGCACCGGCTACGGCCAGGCAGCCGGCCAGTACGACACCACGGATGTGCAGACCAGTCTCGACGGCT CACTGTCGGGCCCGTTCCAGCTGTTTGGCCGAGAGCATGAGCTGATGCTCGGGGTCAGTCGTCGCGAAGAGAAGTTTGACCAGAAAGGCGGTTTCTACGG CTCCACGCCAATCGATATCTACCACTTCAATCCCAATGTGATTGCAAAACCAGACCCTGCCACGCGCACTGCCTATGTCAGCCAGAACACCGCCACCGAG GAAGGTGTCTACGCTGCTGCGCGTTTCAACCCGATTGATCCGTTGCACCTTATCGTCGGCAGCCGAGTGAGCTGGTACGACTACCAGAATCGTTCGGCCA ATAATGGCGACTACAAGGTCATCCGCGAAGTCACGCCCTACGCCGGTGTTGTCTATGACCTGAACGACACCTACTCGGCCTACGCCAGCTATACAGAAAT CTTCAAGCCACAAAACCAGCTGGACGCGGGAGGCGGCGTGCTTGACCCGATGACCGGCGAAAGTTATGAGATCGGTCTGAAAGGCGAGTACTTCGACGGC GGCCTGAATGCCTCGCTGGCAGTCTTCGACATGACCCAGGAAAACCGCGCGTATGCCATCGTCAATCCGCCAGCCACCTGCCAGCAGCAGAATCGCGTCT GTTACGAAGCCGCCGGGGAAGTGCGCAGCCGGGGTATCGACGCAGAAATCACCGGCCAGCTGACATCTGACTGGCAGGCCTCCGCCTCCTACACACTGGT GTTAAGCCAGTACGTGAAGGACCGGACCAATGACAAGGGCGACCTGTTTGCGCCCAACCAACCGAAACACCTGTTCAAGGCGGCAACGTCCTATCACCTG CCCGGCAACCTGAACAAGTGGCGCGTGGGTGCAGATGTCCTGGCGCAAAGCGAGACGTACAACCGGGTCGGCACCGGTCACTCCGTGCAGGATGCCTATG CGGTCGTGGGCCTGATGGCAGGCTACCGGTTCGACGAGCACTGGGACGCGCGAGTCAACCTCAACAACGTATTCGACGAAAAATACTGGCAAGGCATTCC GCTGGCCACCGGCAGCGGCGTGTACGGCGACCCGCGCAATCTGATGGTCTCGCTGAAGTGGTCGCTGTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
ATCCTGCAGCATGCAGGTCGCTCTAAAGAGCTTAAATTCACATCAAGGGAACAAGCAGTCGGTGCGAGGCTCAAAACAGTCTAGACAAAGGTATTCACGA CAATGCCGTCCCTCAAGGCCTATCATCGGCAGCAGTAAACGCTGCGGACTTGAGTGGTCGGCAGCGCTCGGGTAATGTCATCCAACCGCACAGGACAGAG CACGCTCATGACTTCCAAGCTGGATCAACTCAAGAAATTCACCACCGTTGTTGCTGACACCGGCGACTTCGGCGCAATCAAGAGCCTCAAGCCTCAAGAT GCAACCACCAACCCTTCTCTGCTGCTCAAGGCAGCTTCGAGCGAAAGCAATAAAGCGATGCTCGAAGAGGCATTCGCCCGTGGCAAAGGCGACATAGGTC TGGCCTGCGACCATTTCGCAGTGGCCATCGGTCAGGAGATTCTCAAGGTCGTACCCGGCCGAGTGTCCACTGAAGTGGACGCCCGACTGTCCTTCGACAC
Amino Acid Sequence
>ligand-gated channel
MLRPFLPSLTGILVLGLSATAVAAPVQLDLPAQPLSRSLTQLSQASGLQISVDDSLIASKQAPAVRGSLEPAQALSRLLLGSGLDAQVQGNAAKVFQPAS NGPMTLGNVDISAQTGIAGMATTEGSGSYTTGSMNSATKLPLSIRETPQSVSVITRQRIEDQGMNDLNDVVKYAPGVTLRKFGSDRQQFLARGFAIDNLM YDGLPTIVSTFTLDTISGADLALYDRVEVVRGATGLMTGAGSPSATLNLIRKRPTATPQVSVTASAGSWDRYRTEVDASNRLNDSGTLRGRVVTAYETGN SFVDERDKERQTFYGVLEADLSDSTTWTIGASKQRDDATSDWGSLPSGPNGENLGLPRSTFLSNDWAYWDRQNVSLFTDLTHHFDNGWSSKLAATRIWAE SDMYSNYLTANGTGYGQAAGQYDTTDVQTSLDGSLSGPFQLFGREHELMLGVSRREEKFDQKGGFYGSTPIDIYHFNPNVIAKPDPATRTAYVSQNTATE EGVYAAARFNPIDPLHLIVGSRVSWYDYQNRSANNGDYKVIREVTPYAGVVYDLNDTYSAYASYTEIFKPQNQLDAGGGVLDPMTGESYEIGLKGEYFDG GLNASLAVFDMTQENRAYAIVNPPATCQQQNRVCYEAAGEVRSRGIDAEITGQLTSDWQASASYTLVLSQYVKDRTNDKGDLFAPNQPKHLFKAATSYHL PGNLNKWRVGADVLAQSETYNRVGTGHSVQDAYAVVGLMAGYRFDEHWDARVNLNNVFDEKYWQGIPLATGSGVYGDPRNLMVSLKWSL
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site