Pseudomonas syringae UB0390, IV03_RS22060
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae strain UB0390 contig2.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCGCCCGATTGACCGTCAGCCAGCCATCCACGGCATCCTGACCCGCCTCTGCGAACACCCGCTGCAGCAGTTTGACCTGTTCGCGTCGCAAGCCCTGTTC AAAAAGAGCGCCTTCATCGGTGAGGCCCAACAGTCGTTTGCGCTTGTCATTCTCGGGGGCCGCGCTGTGCACCAGATTCATGGCGATCAGCTGGCGCAGC GGGGCATTGAGGGCCTGTTTGCTGACGCCCAATACGGTGAGCAGCTCCTTGACGCTCAGGCCGGGGTAACGAGCGATGAAAAATACAATGCGCTGATGCA CGCGACTGAAGCCGCGTCTGGCCAGCATTTCATCAGCCTTGGCAGTGAACGCCTGATAGCCGAAGAAGAAGGCTTCCATGGCCATTTGCTGATTGGCAGG TTTTTTAAGGTCAAGCATGTTGACGTATCCAGGTTGATCGTCGTAATTTTAGTCAACCAGTTTGACGTATTTCCAATTGTCTCGGCTACAGGTAACTGCC
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| DNA Sequence for Gene |
>IV03_RS22060
ATGGCTTTCTCCGAACGCGTTTCCCGTCTGAAAAGTTCTCTGATTCGCGAGATCCTCGCCGCCGCTCAGCGTCCGGAAGTGATGTCGTTTGCTGGTGGTC TGCCTGCCGAGTCGATGCTGCCCAAAGTGCAGTGGGCCGATATGCCCGTTGCACTGGGGCAGTACGGCATGAGCGAGGGCGAGCCGGCGCTGCGCGAAGC GCTGGCCGCCGATGCTCGGGCCCTGGGTGTCGACTGCGACGCCCGTCAGGTCATGGTGGTCAGTGGTTCTCAGCAGACACTGGACCTGGCAGCCAAGCTA TACATCGACAAAGGCACCGAAATTCTCCTCGAGGCGCCCACCTATCTGGCGGCGCTGCAGGTATTCCAGCTGTTCGGTGCCGACTGCATCACCGTACCGC TGCAGGCCGAAGGACCGGACCTGGTTGCCATGCGTCAGCGTCTGGAGCAGCACAAACCAGCGTTCGCCTACCTCATCCCGACGTTCCAGAACCCCTCGGC GGTGCGCTACAGCCAGGCCAGTCGCGATGCCGTGGCGGCCTTGCTCGACGAGTTCGGTGTCACGTTGATCGAGGACGAGCCGTATCGTGAGTTGAGCTTT GACGGCGGCAGTGCCAGGCCGATCGTCAGCGGTTTGAAAACGGCCAGCTGGATTTATACCGGTACGGTTTCCAAGACGCTGCTGCCCGGCCTGCGGGTGG GTTATCTGATCGCCAGCTCCGATCTGTTTCCGCACTTGCTGCGTCTGAAACAGTCGGCCGACCTGCATACCAATCGCCTCGGCCAGTGGCAGGCCTTGCA GTGGATTGGTACTGAGCACTATCGTGAGCATCTGGTGACGCTGTGCGAGTTTTACCGGGGTCGTCGTGATGCGTTCGAAAGCGCGTTGCAAACGCATTTT TCCGATCTGGCCACCTGGAACAGCCCACAAGGCGGGCTGTTCTTCTGGCTGACGCTGAAGCAGCCGCTGGACACGCGCACCTTGCTGGATGCAGCGCTGG CGCAGGATGTGGCGTTCATGCCGGGCGAACCTTTTTTTGCCGATCCGGACGCCAATCACGGTCACTTGCGGCTCAATTTCAGCCATATCGACCCTGCACG GCTCGATGAGGGTATAAAACGACTGGCGTCGGTGGTCCGCGCTGCACACCTCCTGCAAGCCGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTCAAGACGTCAACATAGACGCAGCAAGGGAGCAGTCTTATGTACAAGGTTTATGGCGATTACAACTCGGGCAACTGCTACAAGATCAAGCTGATGCTTA ACCTGCTGGGCAGTGAGTACGAGTGGGTGCCGGTGGATATTCTCAACGGCGAAACCCAGACCCCGGCGTTTCTGGAAAAGAACCCCAACGGCAAGATTCC GGTGCTGGAGCTGGAAGATGGCACTTGCCTGTGGGAATCCAACGCGATTCTCAACTTTCTGGCTGACGGCTCTTCGTACCTGCCGAGCGAACCGAGGTTG CGCACCCAGGTGCTGCAGTGGCAGTTCTTCGAACAGTACAGCCATGAGCCGTCGGTCGCGGTTGCCCGATTCATCCAGTTCTATCTGGGCTTGCCGGCCG AGCGCATGACCGAGTATCGCGCCATGCAGAAGGCCGGCTACCGCGCACTGGCGGTCATGGAGCAGCAGCTCGACCGTACGCCGTTTCTGGTCGGCGAGAA
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| Amino Acid Sequence |
>GntR family transcriptional regulator
MAFSERVSRLKSSLIREILAAAQRPEVMSFAGGLPAESMLPKVQWADMPVALGQYGMSEGEPALREALAADARALGVDCDARQVMVVSGSQQTLDLAAKL YIDKGTEILLEAPTYLAALQVFQLFGADCITVPLQAEGPDLVAMRQRLEQHKPAFAYLIPTFQNPSAVRYSQASRDAVAALLDEFGVTLIEDEPYRELSF DGGSARPIVSGLKTASWIYTGTVSKTLLPGLRVGYLIASSDLFPHLLRLKQSADLHTNRLGQWQALQWIGTEHYREHLVTLCEFYRGRRDAFESALQTHF SDLATWNSPQGGLFFWLTLKQPLDTRTLLDAALAQDVAFMPGEPFFADPDANHGHLRLNFSHIDPARLDEGIKRLASVVRAAHLLQAA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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