Pseudomonas syringae UB0390, IV03_RS22165 (zipA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae strain UB0390 contig2.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTTCAAACTCAATCCTGCGCCGTTTTGCATGCTTGACGAGGTGGATGCGCCGCTGGATGACGCCAACGTGGGTCGCTATGCGCGGTTGGTGAAAGAAATG TCACAAACGGTGCAGTTCATCTACATCACCCACAACAAGATCGCCATGGAAATGGCCGATCAACTGATGGGGGTGACGATGCACGAGCCCGGTTGTTCGC GGCTGGTAGCGGTGGATGTGGAGCAGGCGATGGCGCTGGTGGATGCCTGATTCAGCGCCTCGTTCTGCGGCCAGATCGCTGCCCGGAGGCCTGAAAATGC GACGCTTGTACATTGGATGGCAATTTGGGCGGCGAAGAGACGTAACAGACGGTGTAAAGTTACCTTTGGTCGTGCTAGTTTAGTGACCACTTTTTGTTTT CGCGTGGGCGAATTGCCAGTCAGAACATAGACTTGGCACCACGTATTAAAGGGGTTTAGGCCCTTATTTTCAGATTTCTTCATTAGAGGCACTGGATTAC
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| DNA Sequence for Gene |
>IV03_RS22165
|zipA
ATGGAAATCGGTCTGCGCGAGTGGCTGATCGTCATCGGCATAATAGTCATCGCCGGTATTCTCTTTGATGGCTGGCGCCGTATGCGCGGCAGCAAGGGTA AATTGAAATTCAGACTGGATCGGAGCTTCTCCAACCTTCCGGATGAAGAAGAAACCACGTCTGCCGAAGTGCTGGGTCCGCCCCGTGTGCTTGATACGCA CAAGGAGCCGCAGCTCGACGAGCACGATCTGCCGTCCATGAGCGCCAGTCCGCGTGAAGGCAAGCGTGGCAGCAGTGAAAAGCGCAGCGACAAGAAGCGC AAGGACGAGCCACAGCAGGGCGACCTGAACCTGGATCTCGACGGCCCGAGCCTGTTCACTGGCCGCGACGACGATTTCCCGGACGACAAGCCGGCCCAGC GCATCACCGAAGACAAGGACCTGCCTCCTGTTGAGGAAGTGCTGGTCATCAGCGTGATCTCGCGCAGCGAAGGCGGCTTCAAGGGCCCGGCGCTGCTGCA GAACATTCTGGAAAGCGGCCTGCGTTTTGGCGAGATGGATATTTTCCACCGTCACGAGAGCATGGCTGGCAACGGCGAAGTACTGTTCTCGATGGCCAAT GCGGTCAAGCCCGGCGTGTTCGACCTGGACGATATCGACCATTTCAGCACCCGTGCAGTCAGCTTCTTCCTCGGCTTGCCGGGTCCTCGTCACCCCAAGC AGGCATTCGACGTCATGGTTGCCGCCGCTCGCAAGCTGGCCCACGAGCTGGATGGCGAACTGAAGGATGATCAGCGCAGCGTCATGACCGCGCAGACCAT CGAGCATTATCGCCAGCGCATCGTCGAGTTCGAGCGTCGTGCGTTGACCCAGCGTCGCGGTTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCAAGCCCTTGGGCAGCCCCCCGATCATGAGCGTGCTGCGGCACGCCCTGTCGGGGCCTGACCTGAACAGAACAGAGCCAACAGAATGAGCAGCTTCGGC TGCTTTTTTGCTTTTTGAGAGAACACCGTATGAAGGCCGTTGAAACCCGAATCCTGGAACTGCGTGCAGAGCTGGATCAGCATAACTACCGCTACCACGT TCTGGATGAACCGAGCATTCCGGATGTCGAGTACGACCGCCTGTTTCACGAGCTCAAGGCCCTGGAAGCGGAAAACCCTCATCTGGTCACCCCTGATTCG CCCACGCAACGGGTCGGAAGCGCCGCTTTGTCGGCGTTCACTCAGGTGCGTCACGAAATGCCGATGCTTAGCCTGGGCAACGCGTTCGAAGAAAACGACA TGCTCGAGTTCGACCGACGGGTAACCGAGGGGCTGGATCTGCCGTCCGGAGACCTGTTTGGCGAAGGCAGCAAGGTGCAGTACAGCTGCGAGCCCAAGCT
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| Amino Acid Sequence |
>cell division protein ZipA
MEIGLREWLIVIGIIVIAGILFDGWRRMRGSKGKLKFRLDRSFSNLPDEEETTSAEVLGPPRVLDTHKEPQLDEHDLPSMSASPREGKRGSSEKRSDKKR KDEPQQGDLNLDLDGPSLFTGRDDDFPDDKPAQRITEDKDLPPVEEVLVISVISRSEGGFKGPALLQNILESGLRFGEMDIFHRHESMAGNGEVLFSMAN AVKPGVFDLDDIDHFSTRAVSFFLGLPGPRHPKQAFDVMVAAARKLAHELDGELKDDQRSVMTAQTIEHYRQRIVEFERRALTQRRG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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