Pseudomonas syringae UB0390, IV03_RS22445
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae strain UB0390 contig1.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACCGGGCCGATGCTGCTCAAGGCCGTCACCCCGATTACCGCGCAGGATACTGGCGGCACGCTGCATGATCGTCTGGCCGAACTCGGTCCGCCTGCTGTGC TGCAGGCCATTGCCGGTCTGGCAGATGGTTCGCTGGTCGGCGAGGTTCAGGATGACAGCCTGGCCAACTATGCCCACAAACTGAACAAGGACGAGGCGCG CCTGGACTGGACACGTCCGGCCGATGAGCTTGAGCGTCTGGTCCGCGCCTTCAACCCCTGGCCGATCTGCCACAGCACGCTGAACCAGGAAACCCTGAAA GTCCTGGCCGCCGATCTGGCCGAAGGGCAGGGCGCGCCGGGGACGATTCTCGGTGCCAGCAAGGATGGCCTGATCGTCGCGTGCGGGCAGAACGCGCTGC GCCTGACCCGTCTGCAATTGCCGGGCGGCAAGCCGCTGAACTTCACCGACCTGTTCAACAGCCGTCGTGAGAAATTTGCCATCGGCACGGTGCTGGGCCA
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| DNA Sequence for Gene |
>IV03_RS22445
ATGAACCCGCGTCTGGCCGCCGCCAAGGCACTGGCTGCCGTGCTCAGCGGCAAGGCTTCGCTGAACAGCTCGTTGCCGACTCAACTGGACAAGGTCGAGG TGCGAGATCGTGGCCTGACTCAGGACCTGGCGTTCGGTACCGCGCGCTGGCAGCCACGCCTGTCGGCACTGGCGGCCAAACTGCTGCAAAAGCCATTCAA GGCCGCCGACGCCGACGTTGAAGCGTTGTTGCTGGTCGGCCTCTATCAGCTGTTCTACAGCCGCATTCCGGCCCACGCTGCCATCGGCGAAACCGTAGGC TGCGCCGACAAATTGAAAAAGCCCTGGGCCAAAGGCTTGCTCAACGCCGTGCTGCGCAATGCGCAGCGTGACGGCGAGGCACTGCTGATCGAGCTGGAAC ACGACCCGGTGGTGCGTACGGCCCACCCGCGCTGGCTGCAGAAAGCCTTGAAAGCGGCCTGGCCGGAACAGTGGGAAGCCATCTGCGCGGCCAACAATGC GCACCCGCCGATGATTTTGCGCGTCAACCGACGCCATCACCGTCGCGATCAATACCTCGAACTGCTCAACACTGCCGGCCTGCAAGCCAGCGCGTGCACC TTCAGTCAGGACGGCATCGTCCTCGCCGAGCCGTGCGATGTGCGCTCGCTGCCCGGTTTTGCCGAAGGCTGGATCAGCGTGCAGGACGAAGCCGCGCAAC TGGCCGCCGACCTGCTGGAACTGGCCCCCGGGCAACGGGTACTCGATGCCTGCTGCGCGCCGGGTGGCAAAACCTGCCATTTGCTGGAAGTGCAGCCGCA ACTGAGCGGCGTGGTGGCGGTGGATCTGGAAGCCAAGCGTCTGGTGCGCGTGCGTGAAAACCTTGATCGCCTGGGCCTGGATGCCGAGCTGATCGCCGCC GACGCACGTGAGACGACGCAGTGGTGGGACGGCAAACCGTTCCAGCGCATCCTGCTCGATGCACCGTGCTCGGCGACCGGCGTGATTCGTCGCCATCCGG ACATCAAACTGACTCGCCAGGCAGACGACATCGCTGCGCTGGCAGCCTTGCAGGGCGAGCTGCTCGACGCCTTGTGGCCTACGCTGCAAGTAGGCGGCAT GCTGGTGTACGCGACCTGTTCGACACTGCCGACCGAAAACACCGACGTCATCGAGGCGTTTCTGGCGCGTACCTCCGGGGCCAGAGAGCTGGATATTGCC GGGCAGGCCGGACAGCCACCTGCGGGTATCAAGCAAACCCATGGTCGCCAGCTGCTGGCCCAACAAGGTGGCCACGATGGTTTCTACTACGCCAAACTGA TCAAGATCGCGGCGGCGCGGGAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGCGTGAAAATCATCATTCTGGGTGCAGGGCAGGTGGGCGGTACGCTGGCCGAGCATCTGGCGGGCGAAGCCAACGATATCACCGTGGTCGACACTGAC GGCGACCGGTTGCGCGATCTGGGCGACCGTCTGGACATCCGTACCGTACAGGGCAAGGGCTCCTACCCGGCGGTATTGCGTCAGGCCGGCGCAGACGACG CCGACATGCTGGTTGCGGTGACCAGCAGCGACGAAGCCAACATGATTGCCTGTCAGGTGGCGCATACGCTGTTCCACACGCCGACCAAGATCGCGCGCAT CCGTGAAGCGGCGTACCTGACGCGCGCAGGCCTGTTCGATAAAAGCGCGATCCCGGTCGATGTGCTGATCAGTCCGGAGCAGGTCGTCACCAACTACATC AAGCGTCTGATCGAGTACCCCGGCGCGCTGCAGGTGATCGACTTCGCCGAAGGCAAGGCGCAGTTGGTCGCGGTCAAAGCCTATTACGGCGGCGCGTTGG
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| Amino Acid Sequence |
>16S rRNA methyltransferase
MNPRLAAAKALAAVLSGKASLNSSLPTQLDKVEVRDRGLTQDLAFGTARWQPRLSALAAKLLQKPFKAADADVEALLLVGLYQLFYSRIPAHAAIGETVG CADKLKKPWAKGLLNAVLRNAQRDGEALLIELEHDPVVRTAHPRWLQKALKAAWPEQWEAICAANNAHPPMILRVNRRHHRRDQYLELLNTAGLQASACT FSQDGIVLAEPCDVRSLPGFAEGWISVQDEAAQLAADLLELAPGQRVLDACCAPGGKTCHLLEVQPQLSGVVAVDLEAKRLVRVRENLDRLGLDAELIAA DARETTQWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQADDIAALAALQGELLDALWPTLQVGGMLVYATCSTLPTENTDVIEAFLARTSGARELDIA GQAGQPPAGIKQTHGRQLLAQQGGHDGFYYAKLIKIAAARE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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