Strain | Pseudomonas syringae strain UB0390 contig1.1, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
CCCTGTCGGTTGCGCAGTACGACAAGACCATCGACCGCGAGTACAAGACGGCCCTACGCGAGCTGGCGACCTACATGATGGAAGATCCACGCTCGATCTC CCGGGTACTGGACGTCATCTGGGTGCTGCGCTCTCTGGAGCGAATCGGCGACCATGCACGCAACATCTCCGAGCTGGTGATCTACCTGGTGCGCGGGACC GACGTGCGGCACATGGGTCTCAAGCGCATGAAGGAAGAAGTGCAGGGTATATCGAGCGAAACCGCTAATGTTCCGGGCAACGCTGACGATAAGTAAGATT GCCTGCGAGAAAAACGCCCAGCACGCGCTGGGCGTTTTTCGTTGTGCAGATCAGTATTTCCCGTCGCCAGCGGACTAAATGTCGCGGCGCAGTCAATCAA TATGGCAGTTGGCTATCAGTCAACGCTATGCTTGCCGAAACAAAGGGCGTGTTGGCATACCGCAGTTCGCCTCCAGGTGAACACGCCCGCAGGAGCGTCG
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DNA Sequence for Gene |
>IV03_RS23005
ATGAGTAAGGTCAGTGTATTGGTGGTGGATGACGCGACTTTCATTCGCGACTTGGTCAAGAAAGGGCTGCGCAATTATTTTCCCGGGATTCATACCGAGG ATGCAGTCAATGGTCGCAAGGCTCAGACGTTGCTGGGCAAAGAGTCGTTCGATCTGATTCTGTGCGACTGGGAAATGCCCGAAATGTCCGGCCTGGAGCT GTTGACCTGGTGCCGTGAGCAGGACAATTACCTGAGAACCGTTCCGTTCATCATGGTGACCAGCCGTGGTGACAAGGAAAACGTGGTGCAGGCCATTCAG GCCGGAGTAACCGATTTTGTCGGCAAGCCGTTCACCAATGAGCAGCTGCTGACCAAGGTCAAGAAAGCGCTGGCCAAAGTCGGCAAGCTTGACGCCGTCA TGTCCACAGCCCCGGCGCGTATGAACTCGCCGCTCAATGACTCATTGAGTGCATTGACCGGTGGCAAGGCCGAAGTGGTTCGTGCCGCGCCTGCTGCAGC CGCAGCAGCAGCCCCCAAGCCAGCGCCTGCACCCGCCCGATCGGCAGAGCCGACTGGTCGCGGACAGGGCCAGTTGCGCCTGCCCAACGGCATTCAGCCG TGTGTGATCAAGGCCCTTACCCTGAAAGACGCCACACTGGTGATACGCGTCAGCGAAAACCTGCCACAGGTACTCGACAGTGCGGTGCTGGACCTTGAGC AGGGCGAGAGCAACGAAGTGGCGCGCCTGAATGGCTATCTGCACTCAGTCGCCGCGTTCGAGCAGAAGCCCGACAGCGAATGGCTGCAAGTGACCTTCCG CTTTGTCGATCATGACGCGCAGAAGCTCGATTACCTTTCGCGCCTCATTGCTCGTGGCACCGCGCAGAAACACTTCATCCCGGGCGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
TACCCGCTTCTGAGCTGAATGGCATGCCGCTGCTGCATGAGCCTTGCGCGGTGTCACACGACACTGCGTAACGTGCGTCTGACGTGCCTTCCTTGACGCT TCATTCATGTCCGATTGATACCCTTGCGTCCTCTTCTGCCTGCAAGGCTGCTAGGCTTGGCCCCCAGTGCCCTTGAACCCGAACATCTCCGATGCTTGAA CGCCTGTTTATCCTGTTTGCCCTGACGTTGACTGTGCAGTCGGCCGGGGCTGTCACGATTTATAAATTCACCGATGCCAGTGGCGTGGTGTCCTTTTCGG ACCGGCCGACGCCCGGCGCATCGGTCATGGTGTTTCGGGACCGCATGGTCGAGCGCATCGACGGCCAGGTGCACTTGAGTGTCAGGCGTGAAAGGGGCGT ACACAGCCTGTATGTACGCAACGATCTGTACGCCCCTGTCGAAGTCGAACTCAGGCTTTCCAGTGTGACCAACGTGTTGGGGGTCTCTGGCTCGTCAGCA
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Amino Acid Sequence |
>chemotaxis protein CheY
MSKVSVLVVDDATFIRDLVKKGLRNYFPGIHTEDAVNGRKAQTLLGKESFDLILCDWEMPEMSGLELLTWCREQDNYLRTVPFIMVTSRGDKENVVQAIQ AGVTDFVGKPFTNEQLLTKVKKALAKVGKLDAVMSTAPARMNSPLNDSLSALTGGKAEVVRAAPAAAAAAAPKPAPAPARSAEPTGRGQGQLRLPNGIQP CVIKALTLKDATLVIRVSENLPQVLDSAVLDLEQGESNEVARLNGYLHSVAAFEQKPDSEWLQVTFRFVDHDAQKLDYLSRLIARGTAQKHFIPGA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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