Pseudomonas putida S16, PPS_0868
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida S16 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CCTGATCTGGATGGCAATCATGATGTACCAGATCAACAAGCACGGCATCACGCCGACCGCCAAGACCCGCATGAGCTGCCTGAGCCTGTTCTGGCACTTC CTGGACGTGGTCTGGATCTGCGTATTCACCGTCGTCTACCTGCTGGGAGTTCTGTAATGGCTAACGCACACGACACTCATCACGAAGGTAACCACGGCAG CGTCAAGTCGTACATGATCGGCTTCATCCTGTCGATCATCCTGACTGCGATCCCGTTCGGCCTGGCCATGTCGCCAAGCCTGCCGAAGAACCTGACCGTT CTGATCATTGTTGCCATGGCCGTGATCCAGGTAGTAGTGCACCTCGTGTACTTCCTGCACATGGACCGCTCGAAAGAGCAACGCAACAACGTTTCGACGT TCCTGTTCACCACCCTGGTGATCGCTCTGCTTGTCGGCCTGTCGCTGTGGATCATGTTCAGCATCCACTTCGAAATGTTGGCCAAGTGAGGTAAGACTGC
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| DNA Sequence for Gene |
>PPS_0868
ATGTCCGTTAAGCACTTTATCCAAATCACCAAACCGGGGATCATTTTCGGTAACGTGCTTTCCGTGGCAGGCGGTTTCTTCCTTGCCTCGAAGGGCCATG TGGATTTCGCCCTGTTCCTGGCGGTGGTGATCGGTACTTCGCTGGTGGTTGCGTCCGGATGCGTGTTCAACAACTGCATCGACCGTGACATCGACCACAA GATGGAGCGCACCAAGAACCGCGTCATGGTCCAGGGCGGCATGTCGCTGCCCCTCGCGCTGATCTACGCCACCCTGCTCGGGGTGGCGGGTTTCAGCCTG CTGTATGTCCAGGCCAACCCGCTGTCGGCGTTCTGTGCGCTGATCGGCTTCATCGTCTACGTCGGTTTCTACAGCCTGTGGCTGAAGCGTAAATCGGTGC ACGGCACCTTGGTCGGCAGCCTGTCTGGTGCCATGCCTCCGGTGATCGGCTATTGCGCCGTGAGCAACAGCTTCGACCTGGCTGCGTTTACCCTGCTGGT GATGTTCAGCCTGTGGCAGATGCCGCACAGCTTCGCAATCGCGATCTTCCGCTTCAAGGATTACAGCGCTGCCAACATTCCGGTCCTGCCGGTGGCACGT GGCATCCTCGCGGCGAAGAAGCAGATCGTGCTGTACGTGCTGGCTTTCGTGCTCGCAACCCTGATGCTTACCCTCGGCGGTTACGCCGGCCTCGGCTATC TGGCCGTGGCAGCAGCCATGGGCCTGTACTGGCTGTACATGGCCTGGGCTGGCTACAAGGCCGAGGACGACAGCAAGTGGGCACGCAAGGTGTTCGGCTT CTCCATCCTCACCGTCACTGCCCTGAGTGTGATGATGGGTGTGGACAGCCAGACCGCTGCGGACGTGCTGATGACATACGCACGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TACTGCTGCCTGTTTCACGAAAAAGCCCGGCCACTGTGCCGGGTTTTTTTTATGGGCGTTTTTCTGTGCCGGCCTCGTTCGCGGGCTCGCCCGCTCCCAC AGGTACGGCGCAGGTCTCGGGACAAGTGAGTAATCCTGTGGGAGCGGGCAAACCCGCGAAGAGGCCGGCACAGCAGAATATAAATTTCTTATTTTCAAAA AATACATCTGAAAAGATCTATGAAAACAGGAAATTGTCCTTTACAGGAATGCTGTATCGGCATTATCTTCTGATCCAGGCCGCCATATCGGCCAGCGTCG CTCGGACGGTTCCGGGCGCTTACGTACTCAGAGGAAGCCATGGCCAACCCAGGTTCGCCGCGTCGCTTTGCGCGCATCGATCGTCTCCCCCCTTACGTTT TCAACATCACTGCCGAGCTCAAGATGGCTGCCCGCCGCCGTGGCGAGGACATCATCGACCTGAGCATGGGCAACCCCGATGGCGCTACCCCACCGCACAT
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| Amino Acid Sequence |
>protoheme IX farnesyltransferase
MSVKHFIQITKPGIIFGNVLSVAGGFFLASKGHVDFALFLAVVIGTSLVVASGCVFNNCIDRDIDHKMERTKNRVMVQGGMSLPLALIYATLLGVAGFSL LYVQANPLSAFCALIGFIVYVGFYSLWLKRKSVHGTLVGSLSGAMPPVIGYCAVSNSFDLAAFTLLVMFSLWQMPHSFAIAIFRFKDYSAANIPVLPVAR GILAAKKQIVLYVLAFVLATLMLTLGGYAGLGYLAVAAAMGLYWLYMAWAGYKAEDDSKWARKVFGFSILTVTALSVMMGVDSQTAADVLMTYAR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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