Pseudomonas putida S16, PPS_0011
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida S16 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GCATGGTCAGCATCGTCCTGGGCCAGCACCACATCCGTGCTACAACCGGTGAGTTCACCTTTACTTCCAAGCTGGTGGACGGCAAGTTCCCGGACTACGA GCGCGTACTGCCCAAGGGCGGTGACAAGCTGGTGGTCGGCGACCGTCAGGCGCTGCGTGAAGCCTTCAGCCGTACTGCGATTCTTTCCAACGAAAAGTAC CGCGGTATCCGCCTGCAACTGGCTGCTGGCCAACTGAAGATCCAGGCCAACAACCCCGAGCAGGAAGAAGCTGAAGAAGAAATCAGCGTGGACTACGAAG GTAGCTCGCTAGAAATCGGTTTCAACGTCAGCTACCTGCTGGACGTGCTGGGCGTAATGACTACCGAGCAAGTTCGTCTGATCCTGTCCGATTCCAACAG CAGTGCCCTGCTGCAGGAAGCTGGCAATGACGATTCTTCCTACGTTGTCATGCCAATGCGTCTGTAACCCGTAGCAGGCGAAATGTCTCTTCGACGTATC
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| DNA Sequence for Gene |
>PPS_0011
ATGGTCACCGCGGTGCGCAACTTGCACCCGGTGACACTCTCACCGTCCCCCCGCATCAACATCCTTTACGGCGCCAACGGCAGCGGCAAAACCAGCGTGC TTGAGGCCGTGCACCTGCTCGGGCTGGCGCGCTCGTTCCGCAGCACCCGCCTGAACCCGGTTATCCAGTACGAACAACCGGCCTGTACCGTGTTCGGCGA AGTGCAATTGGCCGAGGGTGGCAGCAGTAACCTGGGTGTATCCCGGGAGCGGCAGGGGGAGTTCACTATTCGCATCGATGGGCAGAATGCGCGGAGTGCG GCGCAACTGGCTGAATTGCTACCGCTCCAGCTCATCAATCCGGACAGTTTCCGCTTGTTGGAAGGCGCTCCGAAAATACGCCGCCAGTTTCTGGATTGGG GGGTGTTCCACGTGGAACCTCGTTTTCTGCCAGCCTGGCAACGGCTGCAGAAGGCACTGCGGCAGCGGAACTCATGGTTGCGGCATGGTACACTTGACCC AGCTTCGCAAGCCGCCTGGGACCGGGAATTGTGCCTGGCCAGTGCGGAAATAGATGAATACCGTCGCAACTACATCAAGGCCTTGAAGCCCGTCTTCGAG CGAACCCTGAGCGAACTGGTCGAGCTGGACGGGTTGACCCTTAGCTACTACCGAGGTTGGGACAAGGACCGGGAACTGCAAGAAGTACTCGCTTCCTCTC TCCTTCGCGATCAGCAGATGGGCCACACCCAGGCCGGTCCGCAGCGTGCTGATCTGCGTCTTCGTCTGGCTGCCAACAATGCAGCCGACATCCTGTCGCG TGGTCAGCAAAAGCTGGTGGTGTGCGCATTGCGCATTGCCCAAGGCCACCTCGTTAGTCAGGCTCGCCGCGGTCACTGTATTTATCTCGTGGATGACTTG CCGTCCGAACTGGACGACCAGCATCGCCGCGCGCTGTGTCGCTTGCTTGAAGAATTACGCTGCCAGGTGTTCATCACCTGTGTAGATCACGAATTACTGA GGGAAGGCTGGCAGACGGAAACGCCAGTTGCTTTGTTCCACGTGGAACAAGGCCGTATCACCCAGACCCACGACCATCGGGAGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ATGCATGAGCGAAAATCAAACGTACGACTCCTCCAGCATCAAGGTGCTGAAAGGTTTGGATGCCGTGCGCAAGCGCCCCGGCATGTACATTGGCGACACC GATGATGGTAGCGGCCTGCACCACATGGTCTTCGAGGTGGTCGACAACTCGATCGACGAAGCCCTCGCCGGTCACTGCGATGACATCACCGTCATCATCC ACCCGGACGAATCCATCAGTGTGCGCGACAACGGTCGCGGCATTCCGGTCGACGTGCATAAAGAAGAAGGCGTTTCCGCAGCCGAGGTCATCATGACCGT GCTGCACGCCGGCGGTAAGTTCGACGACAACTCCTATAAGGTATCCGGCGGTCTGCACGGCGTAGGTGTTTCTGTTGTGAACGCCCTGTCCGAGAAACTG GTACTGACCGTTCGTCGTAGCGGCAAGATCTGGGAACAGACCTACGTTCACGGTGTTCCACAGGCGCCGATGGCGGTTGTAGGTGACAGCGAAACCACCG
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| Amino Acid Sequence |
>recombination protein F
MVTAVRNLHPVTLSPSPRINILYGANGSGKTSVLEAVHLLGLARSFRSTRLNPVIQYEQPACTVFGEVQLAEGGSSNLGVSRERQGEFTIRIDGQNARSA AQLAELLPLQLINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFLPAWQRLQKALRQRNSWLRHGTLDPASQAAWDRELCLASAEIDEYRRNYIKALKPVFE RTLSELVELDGLTLSYYRGWDKDRELQEVLASSLLRDQQMGHTQAGPQRADLRLRLAANNAADILSRGQQKLVVCALRIAQGHLVSQARRGHCIYLVDDL PSELDDQHRRALCRLLEELRCQVFITCVDHELLREGWQTETPVALFHVEQGRITQTHDHRE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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