Pseudomonas putida GB-1, PputGB1_4984
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida GB-1 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TCCTCGCAGTCATTGCCACGGGCCTTGCTTTCTACTTGGTGTACGATCTGATCGCCAAGCGTGGCTCGTCGTACCGGCCGGAAATCTTCCATGCTGTGGT GGACATGATTGCCGCGCATCCCTGGACTGGCCTGGGCCTGGGCTCGGCCTACGAGGTGAGTGCGGTTGGCAAGCATTTTGACCATACCCACAACATGTTC ACCCACATCGCGGTCGAGATGGGGCTGCCCGGTATGCTGCTGTGGACCATGGTATGGCTGTTCACGCTGGGTGAAATCGTGCGCGCGCGCGGCACCCTGT TCGGCAAGGTCCTGCTGGGGTTCTGGGTGTATTCGACCCTGGCCATGCAGTTCGATGCTGCCAGCCTCACTGGTACGCCGCGTGCCGAATGGTTCATCAG CTGGCTGCCGGTGGGCCTTGCCATGATGCTGCCATGGGGGCGTGCCGAAAATGACGCCTGTGGTAAAATTTCCGGTTCAACCTGAACAGCGAGCTCGATA
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| DNA Sequence for Gene |
>PputGB1_4984
ATGGCCGAAACCCCGCGACCGGCGGAGCACACCTCCAGCCTGAAGATCTACTTCCGGCTGCTGAGCTATGTGAAACCCTATGTCGGCATTTTCCTGCTGA GCATTGTCGGTTTCGTGATCTTTGCCTCGACCCAGCCGATGCTGGCCGGCATTCTCAAGTATTTCGTCGATGGCCTGAGCAACCCCGAAGCGGTGTTGTT CCCCAACGTGCCCTACCTGCGTGACCTGCAATTGCTGCAGGCGGTGCCGCTGCTGATCATCCTGATCGCCGCCTGGCAGGGCCTGGGCTCGTTCCTCGGC AACTACTTCCTGGCCAAGGTGTCCCTGTGCCTGGTGCACGACCTGCGTGTGGAGTTGTTCAACAAGCTGCTGGTGCTGCCTAACCGCTACTTCGACAACC ACAACTCCGGTCACCTGATTTCGCGCATCACCTTCAACGTGACCATGGTCACCGGCGCGGCCACCGATGCCATCAAGGTGGTGATCCGCGAAGGCCTGAC CGTGGTGTTCCTGTTTGCCTACCTGCTGTGGATGAACTGGCACCTGACCCTGGTGATGGTCGCCATCCTGCCGGTGATCGCGGTCATGGTCAGCATCGCC AGCAAGAAATTCCGCAAGCAGAGCAAGAAGATCCAGGTGGCAATGGGCGACGTTACCCACGTGGCGTCGGAAACCATCCAGGGCTACCGCGTGGTCCGCA GCTTCGGCGGCGAGGCCTACGAGGAGCAGCGTTTCGGCAAAGCCAGCCAGAGCAACACCGACAAGCAACTGCGCATGACCAAGACCGGCTCGCTGTACAC GCCGATGCTGCAACTGGTGATCTACAGCGCCATGGCCGCGCTGATGTTCCTGGTGCTGTTCCTGCGGGGCGAGTCCACCGCCGGTGACCTGGTAGCCTAT ATCACTGCTGCTGGCCTGCTGCCCAAGCCGATTCGCCAGCTGTCGGAAGTCAGCTCGACCATCCAGAAGGGCCTGGCAGGTGCCGAGAGCATCTTCGAGC AGTTGGACGAAGAGCCTGAGCTGGACACCGGTACTGTCGAGAAGGAGCGTGTGGAAGGGCGCCTGGAAGTGCGCAACCTGAGCTTCACCTACCCGGGTAC CGAGCGTGAAGTGCTGAGCGACATCAGTTTTGTCGCCGAACCTGGGCAGATGATCGCCCTGGTCGGCCGTTCCGGCAGTGGCAAGTCGACCTTGGCGGCG CTTATCCCACGCTTCTATCACCACGACCAGGGGCAGATTCTGCTCGATGGCGTGGAAATCGAAAACTATCGCCTGCGCAACCTGCGTCGCCATGTTTCGC AGGTAACCCAGCACGTCACCCTGTTCAACGACACCGTGGCCAACAACATCGCCTACGGTGACTTGGCCGGTGCCCCACGCGCAGACATCGAAGCCGCCGC AGCCGATGCCTACGCCAAGGAGTTCGTCGACCGGCTGCCGAAGGGCTTCGATACCGAAGTGGGAGAGAACGGTGTACTGCTGTCCGGTGGCCAGCGCCAG CGCCTGGCAATTGCACGGGCGCTGCTGAAAAACGCGCCGCTGCTGATCCTCGACGAGGCTACTTCTGCGTTGGATACCGAGTCCGAGCGGCATATCCAGG CTGCCCTGGATCACGTGATGCAAGGCCGTACCACGCTGGTGATCGCTCACCGCCTGTCGACGATCGAGAAGGCCGACCAGATCCTGGTCATGGACCAGGG CCGCCTGGTCGAGCGTGGCACGCATGCCGAGCTGCTTGCGGCCAATGGCCATTATGCCCGCTTGCATGCCATGGGCCTGGATGAGCCGGCCAAGGCCGAT ATCACCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACCCTCCTTGATCGGGGCCGTCATGGCCCCGATTGTCACGGGAATTTTCTGGGTACGATCTGGCCATAAAGCCGTCGACTACCCTGTGCTAATATCCTGC CCCTGTTCATTATTTCCATATGGGTTGCCCATGAAGTTGTCCATGCCGCGTTTCGATCAAGCCCCGGTACTGGTGGTCGGCGATGTCATGCTCGACCGCT ACTGGCATGGCGGTACTTCGCGTATTTCGCCTGAAGCGCCAGTCCCGGTGGTCAAGGTCGATCAAATCGAGGATCGCCCCGGCGGCGCGGCCAACGTTGC CTTGAACATTGCCGCGCTGGGCGCGCCGGCTTCGCTGATCGGCGTCACCGGCCAGGACGAAGCTGCCGACAGCCTGGCCAACAGCCTGCAGGCTGCCGGT GTGCGTTCGGTGTTCCAGCGCATCGCGCACCAGCCGACCATCGTCAAGCTGCGGGTCATGAGCCGTCACCAGCAACTGCTGCGTATCGATTTCGAAGAGC
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| Amino Acid Sequence |
>lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA
MAETPRPAEHTSSLKIYFRLLSYVKPYVGIFLLSIVGFVIFASTQPMLAGILKYFVDGLSNPEAVLFPNVPYLRDLQLLQAVPLLIILIAAWQGLGSFLG NYFLAKVSLCLVHDLRVELFNKLLVLPNRYFDNHNSGHLISRITFNVTMVTGAATDAIKVVIREGLTVVFLFAYLLWMNWHLTLVMVAILPVIAVMVSIA SKKFRKQSKKIQVAMGDVTHVASETIQGYRVVRSFGGEAYEEQRFGKASQSNTDKQLRMTKTGSLYTPMLQLVIYSAMAALMFLVLFLRGESTAGDLVAY ITAAGLLPKPIRQLSEVSSTIQKGLAGAESIFEQLDEEPELDTGTVEKERVEGRLEVRNLSFTYPGTEREVLSDISFVAEPGQMIALVGRSGSGKSTLAA LIPRFYHHDQGQILLDGVEIENYRLRNLRRHVSQVTQHVTLFNDTVANNIAYGDLAGAPRADIEAAAADAYAKEFVDRLPKGFDTEVGENGVLLSGGQRQ RLAIARALLKNAPLLILDEATSALDTESERHIQAALDHVMQGRTTLVIAHRLSTIEKADQILVMDQGRLVERGTHAELLAANGHYARLHAMGLDEPAKAD IT
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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