Pseudomonas putida GB-1, PputGB1_4860
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida GB-1 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GAATAAGGAAAGCGCTGTGCGTCTGCGCCTGATTGCGGTCGGCTCGCGCATGCCCAAGTGGGTCGAGGAAGGCTGGCATGAATATGCCAAGCGCCTGCCC ACCGAGCTGTCGCTGGAGCTGGTGGAAATCCCGCTGAATACCCGTGGCAAGAATGCCGACGTCGCTCGCCTGATCCGTCAGGAGGGCGAAGCCATGCTGA GCAAGGTGCAGCCTGGGGAACGCATTGTCACCCTCGAGGTCCATGGCAAGCCCTGGAGTACCGAGCAGCTGGCCACCGAGCTGGACCGCTGGCGCCTGGA TGCGCGCACGGTGAATTTGATGGTGGGTGGCCCGGAAGGCCTGGCGCCCGAGGTTTGCGCGCGCGCCGAGCAACGTTGGTCGCTGTCGCCGCTGACGTTG CCGCACCCGTTGGTAAGGATACTCATCGGCGAGCAGATCTACCGCGCCTGGACCGTGCTGTCCGGGCACCCTTACCACAAATGAGCCTGTAAGCAGTCCG
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| DNA Sequence for Gene |
>PputGB1_4860
ATGTCGCAGCCGATCCGTCTCAAGGACCACGAGAAAGACGCCCGCCTGGTGCGCAACCGCGTCGTGGTCGGCGCGGTGGCGATCATGCTGCTTATTTGCG TGCTGATTGCGCGGCTGTACTACCTGCAGATCATCCAGTACGACTACCACTCCACGCTGTCGGAAAACAATCGGGTGCACGTGCAGCCGATCCCGCCGAC CCGCGGGCTGATCTTCGACCGCAATGGGGTGATCGTCGCCGATAACCGGCCCAGCTTCAGCCTGTCGATGACCCGCGAACGCGCGGGTAACTGGCAGGAA GTGCTGGATACCATCGTTGAAGTGCTGGAGCTGACCGACGACGACCGCGCCCTGTTCGAGAAGCGCATGCGCCAGGGCCGCCGGCCGTTCGAGCCGGTGC CGATTCTGTTCGAGCTCAACGAAGAGCAGATCGCCCGGGTGGCGGTAAACCAGTTCCGCCTGCCGGGCGTGGAAGTGGTGGCCCAGTTGGTGCGGCATTA CCCGCAGGGCGCGCATTTCGCCCATTCGGTGGGGTATGTAGGGCGGATTAACGAGAAAGAGCTGAAAACGCTCGACCCGGTGAACTACAGCGGCACCCAC CATATCGGCAAGACGGGCATCGAGCGTTTCTACGAAGATGCCCTGCACGGCCAGGTGGGTTACGAGGAAGTCGAGACCAACGCCCGTGGCCGTGTGCTGC GGGTGCTCAAGCGTACCGACCCTAAACCGGGCAAGGACATTGTGCTGAGCCTGGACATCAAGCTGCAGGAGGCTGCCGAGGCTGCCCTGGGTGGCCGACG CGGCGCGGTGGTGGCGCTCGACCCTCGGACCGGCGAGGTGCTGGCGATGGTCAGCCAGCCAAGCTTCGACCCCAACCTGTTCGTTACCGGCATCAGCTTC AAGGCCTATGCCGAACTGCGCGACTCGATAGACCGGCCGCTGTTCAACCGCGTGCTGCGCGGCCTGTACCCACCGGGTTCGACCATCAAGCCGGCGGTGG CCATTGCTGGCCTGGACAGTGGTGTGGTCAATGCGGGCAGCCGGGTGTTCGACCCGGGCTACTACCAGTTGCCCAACTACGATCACAAATACCGTAACTG GAACCGTTCCGGTGATGGCTGGGTCGACCTGGACACCGCCATCATGCGGTCCAACGACACCTACTTCTACGACCTTGCGCACAAGATGGGCATCGATCGG CTGTCCAGCTACATGAACAAGTTCGGCATCGGCCAGCGGGTTTCCCTCGACATGTTCGAGGAGTCCGCCGGGTTGATGCCTTCGCGCGAATGGAAGCGTG CTACCCGTCGCCAGGCCTGGTTCCCCGGCGAAACCCTGATTCTCGGCATCGGCCAGGGCTACATGCAGGCCACGCCGCTGCAACTGGCCCAGGCCACTGC ATTGATCGCCAACAAAGGCGTGTGGAACCGCCCGCACCTGGCCAAGACCATCGAAGGCCAGGCACCGGTGGACGACAACCCGATGGAAGACATCGTGCTG CGTGACAAGTCCGACTGGGCCAAGGTCACCCATGGCATGGAGCAGGTGATGCACAACGCCCGTGGTACCGCGCGCAAGGCCGCCGCCGGTGCTCAGTACC GCATTGCCGGCAAGAGCGGTACCGCCCAGGTGGTGGCGATCAAGCAGGGCGAAAAGTACGACCGCAACAAGCTCCAGGAGCGCCACCGCGACCACGCGCT GTTCGTCGCCTTTGCCCCGGCCGAGGCCCCGAAAATCGTGGTGTCGGTAATGGTCGAGAACGGTGAGTCCGGCTCTGGCGTCGCCGCGCCGGTGGTACGC CAGATCATGGACGCCTGGCTGCTCGATGAAAATGGCCGGCTCAAGCCCGAGTTCGCGCCTGCCACCGTTACCCAGGAATCGCCTCTGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGAACAATTTCGATCGCATGCTCTCCAGCGAGGATGTGATGCGTCGGCGCGCCAGCTTTCTGCAGCGCATCCATGTCGACGGCCCCCTGCTGATCATTCT GCTGACCCTTGCGGCTGGCAGCCTGTTCGTCCTTTACTCGGCCAGTGGCAAGAACTGGGACCTGCTGCTCAAGCAGGCCACCTCGTTCGGCATCGGCCTG GTGTCGATGTTCGTCATCGCCCAGCTGGAGCCGCGCTTCATGGCCCGCTGGGTGCCGCTGGCCTACCTGGCCGGGGTGCTGTTGCTGGTAGTGGTGGACG TGATGGGCCACAACGCCATGGGCGCCACGCGCTGGATCAACATCCCCGGGGTGATTCGCTTCCAGCCCTCGGAGTTCATGAAGATCATCATGCCGGCGAC CATCGCCTGGTACCTGTCCAAACGCACCTTGCCGCCGCATTTGAAGCACGTGGCAATCAGCCTGGTGCTGATTGGCGTGCCGTTCATCCTGATCGTGCGT
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| Amino Acid Sequence |
>penicillin-binding protein 2
MSQPIRLKDHEKDARLVRNRVVVGAVAIMLLICVLIARLYYLQIIQYDYHSTLSENNRVHVQPIPPTRGLIFDRNGVIVADNRPSFSLSMTRERAGNWQE VLDTIVEVLELTDDDRALFEKRMRQGRRPFEPVPILFELNEEQIARVAVNQFRLPGVEVVAQLVRHYPQGAHFAHSVGYVGRINEKELKTLDPVNYSGTH HIGKTGIERFYEDALHGQVGYEEVETNARGRVLRVLKRTDPKPGKDIVLSLDIKLQEAAEAALGGRRGAVVALDPRTGEVLAMVSQPSFDPNLFVTGISF KAYAELRDSIDRPLFNRVLRGLYPPGSTIKPAVAIAGLDSGVVNAGSRVFDPGYYQLPNYDHKYRNWNRSGDGWVDLDTAIMRSNDTYFYDLAHKMGIDR LSSYMNKFGIGQRVSLDMFEESAGLMPSREWKRATRRQAWFPGETLILGIGQGYMQATPLQLAQATALIANKGVWNRPHLAKTIEGQAPVDDNPMEDIVL RDKSDWAKVTHGMEQVMHNARGTARKAAAGAQYRIAGKSGTAQVVAIKQGEKYDRNKLQERHRDHALFVAFAPAEAPKIVVSVMVENGESGSGVAAPVVR QIMDAWLLDENGRLKPEFAPATVTQESPL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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