Pseudomonas putida GB-1, PputGB1_4641

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0003677	DNA binding	ISM Inferred from Sequence Model Term mapped from: InterPro:SSF46894	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006355	regulation of transcription, DNA-templated	ISM Inferred from Sequence Model Term mapped from: InterPro:PF00196	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
KEGG	ppg02020	Two-component system	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	ppg02024	Quorum sensing	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
PRINTS	PR00038	LuxR bacterial regulatory protein HTH signature	IPR000792	Transcription regulator LuxR, C-terminal	175	189	4.3E-9
PRINTS	PR00038	LuxR bacterial regulatory protein HTH signature	IPR000792	Transcription regulator LuxR, C-terminal	205	217	4.3E-9
SUPERFAMILY	SSF75516	Pheromone-binding domain of LuxR-like quorum-sensing transcription factors	IPR036693	Transcription factor LuxR-like, autoinducer-binding domain superfamily	3	162	2.09E-38
SMART	SM00421	luxrmega5	IPR000792	Transcription regulator LuxR, C-terminal	172	229	1.7E-16
Pfam	PF00196	Bacterial regulatory proteins, luxR family	IPR000792	Transcription regulator LuxR, C-terminal	175	229	2.4E-14
SUPERFAMILY	SSF46894	C-terminal effector domain of the bipartite response regulators	IPR016032	Signal transduction response regulator, C-terminal effector	166	235	2.72E-15
CDD	cd06170	LuxR_C_like	IPR000792	Transcription regulator LuxR, C-terminal	176	229	5.63858E-14
PRINTS	PR00038	LuxR bacterial regulatory protein HTH signature	IPR000792	Transcription regulator LuxR, C-terminal	189	205	4.3E-9
PANTHER	PTHR44688	-	-	-	127	233	3.9E-13
Pfam	PF03472	Autoinducer binding domain	IPR005143	Transcription factor LuxR-like, autoinducer-binding domain	19	158	5.2E-30
Gene3D	G3DSA:1.10.10.10	-	IPR036388	Winged helix-like DNA-binding domain superfamily	171	235	2.2E-17
Gene3D	G3DSA:3.30.450.80	-	IPR036693	Transcription factor LuxR-like, autoinducer-binding domain superfamily	1	170	8.3E-38

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.