Pseudomonas sp. LAMO17WK12:I4, D885_RS0121520
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. LAMO17WK12:I4 D885DRAFT_scaffold00002.2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATCGGTGCCATAGCTCAGCGGCACGTCAAGGTGCGCATCCAGGGCCGGGATGCGCGCCTGCAGGGCGTTGGCCCGCTGTTCGATTTCCCGGCCGTAGGGG TGTTTGGCAAGGTAGACCCAATACCACCAGGCGCCTGCGGCCACCAGGAGCAAGAGCAGAAGTGCCAAAGCCCATGGCCATCTGCGCGAAAAAAAAGCCT GTTTCTTCATTGCGTACTCGACCGCCTGCACGACGGCCCCATGCCGTTCGAACTTGCTGGGTGAAACGAGCCGAGCCCAAGAGAATTTAGCAACCCTCTA AATCGCTCCCTCAACCATTCGTTTTCGCAGCAGGAGTCACGTCATGAGTACAGTGGATGAAAGTGTCACGTCGTAAGATCCTGGCGGGCCTGGTGGCCGC CGGTGTAGCACTGCCTGCCGGCTATTACGCACGGCAGGCGTGGCAGCGGGCCGAGGAAGCGGAGCTGAGCAGTGACGAGCCTGCGGTGCCGGTCGATGAC
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| DNA Sequence for Gene |
>D885_RS0121520
CTGCCCAATGCGCTGTTAGGTGAACGCCTGGTCGGGATCTGGGACTGGCGCATGACGAGCGATCACCCGGCACTGGCCGAGCTGGCCCGGCCGCAGCAGC TGCTGCTCGACGTAGGGCAGGGTGCCCGTGCCGTGCGCGGCTACCTGGGTACTGCGCCCTATGGCGGTCAGGGTTTGCAGGTATACGGCCCGCTGGCTGC CGACCGGCTGCCGAAGGTGCAACTGAAGATGATGGCGGGTTCTGGCGAGGCCTATGACTGCGATGTCGTGCTGGATGAAATATGGGGCGACTGGAGCGAG GGTGGAGGCAGCGCAACCCTGAGTGGGCACGTACGCCTGGCAGGGACGCAGGCGGGGCATTCCGGGGCGCAAGCGAGCTTTGTCGCCGTCCGCCGACCGT TCGTTCTGGCGCGTGAGCGGCTGCCATACGTGGCGGCCCTGCACGAGGACCTGATTTCACCGCAGCGTCGCTACTATCACCAGCTCTGGCACGCCAGCCG CGATCGCTGGCACCGCATCGATGAGTCCCGGCGGCAGATGGTGCGTGCGCTGGGTTGGCAGGTCGGCCCGTTGGGCAAGGAGCGCAACGCACGCGGGCAT GATCGCCATCGCAACGGCTCCGGCGAGGATTTTCTGTTCATGCATCGGCACATGCTGCATGGCGTGCGCGAGGTCCAGGACCTGCGTTCCTGGGCAAGCC TGCCTGCGGCACGTCCATCGATCGGGCAGGGTGTTCAGGCGTTTTTCGATTACCTCGACAATCGCGACGGCTACAGCGTCCCGCCCAACTGGCAGGCGGC CGGCGATGAAGCCTTCAGCCAGTGGCTGTACTACGTCAAGAGCAGCCAGGGGCTGCACGCCAACTTCCAACTGTGGGAGGCCCAGCTGCATGATCCGCAA TACCTCAGCACCCTGTGTCTGGGAGAGTTGGGTTCACGCATCGAATTGGGGATCCACGATTGGCTGCACATGCGTTGGGCATCCCTGGGGCGTGACCCGA ACTCGGATTACCCGATGCCTTACGGGCGTCGCAACTACGATTTTTCCGAACGCTGGTTCCGCGCCGAGAACGACTTCCTCGGCGATCCGTTTTCCTCCCA CGTCAACCCGGTGTTCTGGGCCTTTCATGGCTGGATCGACGACCGCCTGAACGATTGGTACCTGGCCCACCAGCAGGCGCACCCGGGGGAAGTGAAGCCG AAGATGATCGATGGCATTCCGTGGTTTGCGCCAGGGCGCTGGGTGCGTGTGGCCGAGCCTTGGTTGGGGCCTTCGCGTGAAGGTTGCGGTGCCTGGGGGC TGGGCAATGGCGGCGGCACCGGGAAACTGGACATCGAGACCATGAAGCTGGCCTTGCAGGTCATTTTCAGCCCTGAAGAAGACGGCGATCGCCTGGCCAG CAGGGTGCCTCAGCGGCCTTGGTATGCCCGCCATTTGGCACCCGGCCCGCGACGTGACGGTTTGTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGTTGACGATTTTTGGCCGGTGTTGCAGCAGGTAGGGCTCCCGTCGGGGGGCTTGCCTACCTCGCTGTCATCAGTGTGTCCGATGCCGTCCAGCCACCGC CCAATGCCTTGTAAAGCGCAACACTGGCCTGCAAACGCGCCTTGCGCAGCCGTACCCGTTCGGCCTGTGCTGTAAACAGGCTGCGTTGCGCTTCCAGCAC GCTGAGCAGGTCTTCGGCCCCGGCCCGGTAGCGGTTCTCGGCCAGATCGAACGCGCGTTGCGCTTGGGTGAGCGCTTCATGCTGCCAGTGTGTCTGGCGG TCCAGGCCGTCAACGCTGTTCAAGGCCTTCTCGACTTCGCCGAAACTGGTGATCAGCACGTTGCGATAGGCCTCGAGCAGCTCGTCCTGGCGAGCGATGG CGCGATCACGCTCGGCGCGCAAGGCGCCATTATTGAAAATGGGCGCCGTCAGACCGGCACCGAGGTTGAGCGCCGGATTGCGCAGCAGGTCGATGGCTTT
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| Amino Acid Sequence |
>PvdJ/PvdD/PvdP-like protein
MPNALLGERLVGIWDWRMTSDHPALAELARPQQLLLDVGQGARAVRGYLGTAPYGGQGLQVYGPLAADRLPKVQLKMMAGSGEAYDCDVVLDEIWGDWSE GGGSATLSGHVRLAGTQAGHSGAQASFVAVRRPFVLARERLPYVAALHEDLISPQRRYYHQLWHASRDRWHRIDESRRQMVRALGWQVGPLGKERNARGH DRHRNGSGEDFLFMHRHMLHGVREVQDLRSWASLPAARPSIGQGVQAFFDYLDNRDGYSVPPNWQAAGDEAFSQWLYYVKSSQGLHANFQLWEAQLHDPQ YLSTLCLGELGSRIELGIHDWLHMRWASLGRDPNSDYPMPYGRRNYDFSERWFRAENDFLGDPFSSHVNPVFWAFHGWIDDRLNDWYLAHQQAHPGEVKP KMIDGIPWFAPGRWVRVAEPWLGPSREGCGAWGLGNGGGTGKLDIETMKLALQVIFSPEEDGDRLASRVPQRPWYARHLAPGPRRDGL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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