Pseudomonas cremoricolorata DSM 17059, H618_RS0104715
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas cremoricolorata DSM 17059 H618DRAFT_scaffold00003.3_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGTGCGCGATGAGGCCGGTAACGACACCCTGATGGAAACCGCGACCAGCAGCGTCGACATCCCGCTGATCGGCCCGCAGGCCCAGGCGCGGGTGTGGATC TACTTCGACGGCGACTACGCGCAGATCACCCAGGCCGGCGCGCGGATCAGCCACGCCGAGGGCGACACCGAGGTGCGCGTGCACGAAACCTTCGCCGGCC TGCAGGCGAGCATCGCCCGCTACGCGGTGGAACTGGTGGTGGCCCTCGGCTGGCTGCTGCTGACCCTGTTCGGCCTGGGCTATATCTGCCTGCTGCAACA CCGCGCGCTGGCGGTGAAGAACAAGGGCGGGCGTGGCTGAGGGGAAGGAGCCGTGCCCGCTTCTGGCGTCGGGCATGGGCCGCGCGGGGTGCATGAATGT GCTTTCGCGTGGCGTTGGTAAAAAAGGTAGCGTTTTCGTGTCCCCTTTTTTCATATCGGCTGTCATGTAGGTCAATTGAGCCCCACACGAGAGCCGCACA
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| DNA Sequence for Gene |
>H618_RS0104715
ATGTCTGTATTCCCGCGCCAACGCCCGCGCCTGGCGTCTTCGATTTCCATGCCCACGTTATGCCTGGTTCTGGGCCTGGGCGCCGTGCCTGAGCTGGCGC TGGCCGAGACTCAGCCGCGCAGCTTCCAGATTCCTGCCGGCAGCCTGAGCAGCGCGCTGACGCGCTTCGCCGGGCAGGCCGGGGTCAGCCTGTCGGTGGA CCCGGCATTGGTCGCAGGACGGCAGAGCCCGGCGCTGTCGGGCCAGTACAGCGTGCAGGAAGGGTTCGCGCGTCTGTTGCAGGGCAGTGGTCTGCAATTG CAGGCGGTCGGCACCGACAGCTACACTCTGGTCCCGACGCCTAGCCAGGGCGCGGCCCTGGAAATCGCTCCGACCAACATCCAGAGCCTGCAAGCCGGCG CCGCGCTGGACGGCGAGCGGTATGCCGGCGGCCAGGTGGTGCGGCGCGGCTCCCAGGGGCTGCTCGGCTCGCGGGACTTCATGGACACGCCGTTCAGCAT GACCACCTACAGCAGTGAGTCGATCAAGGCGCAGCAGGCCCGGACCCTGAGCGACATGGTCGCCAGCGACCCGTCGGTGCGCACCACCAACCCGGCAGGC GGGCGTTTCGAGCAATTCACCGTGCGCGGTTTCAGCCTGTTCAACAGTGACGTGTCGTATGGCGGATTGTTCGGTGTATTGCCGACCTACAGCATCGACA TGGAAATGGCCGACCGCGTCGACATCATCAAAGGCCCGAGCCAGCTGATCAACGGCATCTCGCCGCGCGGCAGCGTCGGCGGCGGCATCAACATCGTGCC CAAGCACGCAGGCGACGCACCTCTCACCGAATTCACCGCCAGCTACGCCTCCGACAGTCAGCTTGGCGGGGCGGTGGACGTCAGCCGCCGCTTTGGCGAC CAGGACCAGTTCGGGGTGCGCTTCAACGGCGTCAAACAGGCCGGGGACACCCCGTGGGACAACCAGAGCGTCGACCGCCAGATGGCCGTGGTCGGCCTGG ATTTTCGCGGTGAGCGGCTGCGCCTGTCGACCGACTTCGGCCACACCGAGCGCGATACCGACGCGCCGCAGGAGCGGGTGCTGGTCGGCGCCCTGGCCAA GGTGCCGGACGCCGACAAGGTGCGCCACAACTACGCGCAGAAGTGGAGCAAGGCGCGCACCAACGACACCTTCGGCATGATCAACGGCGAGTTCGACGTC AACGACTCGCTGATGGTCTATGGCGCGGTCGGCGCGCGGGAAAGCAACCACGACTTCCTGCGCCACAACGTACCGATCAGCAACGATGCCGGCGATTTCG TCGTCGCGCCCCGCGGCTTTACCCGCGACGAGAGCGTGCGCACCGGCATGGCCGGGCTGCGCAACTGGTTCGATACCGGCTCGGTCAGCCACGAAGTGAA CCTTTCGGCCAGCTACTTCTATATGGACTTCGAGAACGGCGACACCCGTTACGCCACCGGCAACAGCAACCTGTACGACCCGGTGGCAACGCCCAAGCCC GGGGTGCCGACCCGGCCGTCTTCCTCCACCTACACGGAAAACCGCTTCACCGGGGTGGCGCTGTCCGACACCTTGGGCTTTCTCGAAGACCGCCTGCTGC TGACCCTCGGCGCACGCTGGCAGCGCGTGCAGGTCGATGACTGGGAAGACGGCGTCAAAGGCGAAACCGCCTACGACGAAGAAAAGCTCTCGCCATCGGG CGGCATTCTGTTCAAGGCCACCGATCAACTGTCGCTGTACGCCAACTACATGGAGGGCCTGAGCCAGGGCAAGATCGCCCCGGGTACGGCCAGCAACGAA GACGAAATCTTCCCGCCGTTCATCAGCCGTCAGCTGGAAGTGGGCGCCAAGTACGATTTTGGCCGTTACGCGCTGACCGCCAGCGCCTTTCGCATCAAGC AGCCGGCGTACGAGACCAACGCCGTCACCCGGGTGTTCGGCCCCAATGGCAAGCGCGAGAACACCGGGCTTGAGTTGAGCATGTTCGGCGAACCGCTCGA GGGCGTGCGCCTGCTCGGTGGGGTGATGTACATCCACAGCGAGCTCAAGGACACCCTCGACAGCCGCTTCGACGGCAACCGCGCCCCGGCCACGCCGAGC TACAACGTCAACCTCGGTGCCGAATGGGACGTGCCGCAGGTCGAGGGCCTGACCCTGACCGCGCGTGGTATTCACTCCAGCTCGCAGTACCTCGACCAAG CCAACAGCAAGAAGATCGACGGCTGGGAACGCTACGACCTCGGCGCGCGCTATGCCTTCAAGGTCGAAGGCCGCGACGTGACCCTGCGCGCAAGCGTCGA GAACGTGCTCAACGACCGCTACTGGGCCTCGGCCGGCGCCTCCGACGACAGCGAGGCAGGACTGACCCTGTCGGCGCCGCGCACCTGGCTGCTGTCGACC ACCGTGGCGTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCCGGTATCTGTGTTGGAGCGGCGGACCGTTCGCTCCTACACGATGGACGGCCCTGCAATAACCTTCGGCAAAACCCTGCCGATCACCTAGAATGAGCC GCAGCCGCGATGGCGCATTGCGATTATCTGTTTGAATCTGCACAAACTATTCGAGCCTGCCAGTGTCAGTCACTGCAGGCCGAAGGTTTTTGGCTTTCTT CCATTCTGGAGCACAGGGTTTATGGCGACATTGCAGGGCAGTACGTTGGAAGCGATCAAGAACAATCAAGACCAGCTACTGGATCAATGGATCAACAGCC TCGAAAGCAACGGCGCTACCCGCAACCTCAAGGAGCACGAGCTGCGTCAGCAGACCAGTGGCTTCCTGCAGTTGCTCGCAAACGGCTTGCAGCAGGCCGA TGACGCTACCGGCAATGCCGAGGAAGTTCGCCGCTTTTTGGAAAAACTGTCTGCCTCGCGCGCGCAACTGGGGCACGATTCGCACCAGACCGCGTACTTC
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| Amino Acid Sequence |
>TonB-dependent receptor
MSVFPRQRPRLASSISMPTLCLVLGLGAVPELALAETQPRSFQIPAGSLSSALTRFAGQAGVSLSVDPALVAGRQSPALSGQYSVQEGFARLLQGSGLQL QAVGTDSYTLVPTPSQGAALEIAPTNIQSLQAGAALDGERYAGGQVVRRGSQGLLGSRDFMDTPFSMTTYSSESIKAQQARTLSDMVASDPSVRTTNPAG GRFEQFTVRGFSLFNSDVSYGGLFGVLPTYSIDMEMADRVDIIKGPSQLINGISPRGSVGGGINIVPKHAGDAPLTEFTASYASDSQLGGAVDVSRRFGD QDQFGVRFNGVKQAGDTPWDNQSVDRQMAVVGLDFRGERLRLSTDFGHTERDTDAPQERVLVGALAKVPDADKVRHNYAQKWSKARTNDTFGMINGEFDV NDSLMVYGAVGARESNHDFLRHNVPISNDAGDFVVAPRGFTRDESVRTGMAGLRNWFDTGSVSHEVNLSASYFYMDFENGDTRYATGNSNLYDPVATPKP GVPTRPSSSTYTENRFTGVALSDTLGFLEDRLLLTLGARWQRVQVDDWEDGVKGETAYDEEKLSPSGGILFKATDQLSLYANYMEGLSQGKIAPGTASNE DEIFPPFISRQLEVGAKYDFGRYALTASAFRIKQPAYETNAVTRVFGPNGKRENTGLELSMFGEPLEGVRLLGGVMYIHSELKDTLDSRFDGNRAPATPS YNVNLGAEWDVPQVEGLTLTARGIHSSSQYLDQANSKKIDGWERYDLGARYAFKVEGRDVTLRASVENVLNDRYWASAGASDDSEAGLTLSAPRTWLLST TVAF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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